Table 1 Selection of SAS showing differential expression when high and low Brix plants were compared or when mature and immature internodes were compared.

SCCCLR1022D05.g

adapter

14-3-3 protein

GF14

SCCCRZ1001D02.g

adapter

14-3-3 protein

GF14

SCEQRT1031D02.g

adapter

14-3-3 protein

GF14

SCEQRT1025D06.g

adapter

14-3-3 protein

GF14

SCVPLR1049C09.g

calcium metabolism

calmodulin-binding protein

AAA family ATPase (cell division cycle protein 48 sub-family)

SCCCRZ1C01H06.g

calcium metabolism

calmodulin-binding protein

Apyrase (Nucleoside diphosphatase)

SCJLLR1108H07.g

calcium metabolism

calmodulin-binding protein

Ca(2+)-ATPase

SCEZLB1012F10.g

calcium metabolism

calmodulin-binding protein

Cyclic nucleotide-gated calmodulin-binding ion channel

SCCCAM1001A03.g

calcium metabolism

calmodulin-binding protein

Multidrug resistant (MDR) ABC transporter

SCRFLR2037F09.g

calcium metabolism

calreticulin

CRT2 Calreticulin 2

SCCCLR2C02A05.g

cell wall metabolism

expansin

EXPA11

SCQGRT1040G03.g

cell wall metabolism

expansin

OsEXPA23

SCACSB1037A07.g

cell wall metabolism

cytochrome P450

P-coumaroyl shikimate 3'-hydroxylase

SCEZHR1087F06.g

cell wall metabolism

cytochrome P450

Ferulate-5-hydroxylase

SCSGFL4193B05.g

cell wall metabolism

cytochrome P450

Cinnamic acid 4-hydroxylase

SCRFLR1012F12.g

cell wall metabolism

.

Caffeic acid 3-O-methyltransferase

SCBFLR1039B05.g

cell wall metabolism

polysaccharide metabolism

Xyloglucan endotransglycosylase

SCCCLR1048D07.g

cell wall metabolism

lignin

Phenylalanine ammonia-lyase

SCEQRT1024E12.g

cell wall metabolism

lignin

Phenylalanine ammonia-lyase

SCSGAM1094D05.g

cell wall metabolism

lignin

Phenylalanine ammonia-lyase

SCCCCL6002B05.g

hormone biosynthesis

auxin

Nitrilase

SCEQRT1028H06.g

hormone biosynthesis

auxin

Nitrilase

SCRFLR1012D12.g

hormone biosynthesis

auxin

Nitrilase

SCVPLR2012A10.g

hormone biosynthesis

ethylene

ACC oxidase

SCCCRT1001E01.g

hormone biosynthesis

jasmonic acid

Lipoxygenase

SCJFRT1007H07.g

hormone biosynthesis

jasmonic acid

Lipoxygenase

SCCCLR1C03G01.g

hormone biosynthesis

jasmonic acid

Omega-6 fatty acid desaturase

SCCCAM2004G02.g

hormone-related

auxin

Auxin transport/auxin eflux carrier (OsPIN1c)

SCCCLR2002F08.g

hormone-related

auxin

dormancy/auxin associated family (auxin-repressed)

SCBGLR1023D05.g

pathogenicity

R-gene transduction

Zinc finger protein (LSD1)

SCAGLR1043F02.g

protein metabolism

calmodulin-binding protein

HSP70 (heat shock)

SCCCCL3120G07.g

protein metabolism

calmodulin-binding protein

HSP70 (heat shock)

SCCCRZ1003A03.g

protein metabolism

calmodulin-binding protein

HSP70 (heat shock)

SCEQRT2099H01.g

protein kinase

calcium-dependent

ScCDPK-27

SCVPAM1055A12.g

protein kinase

casein kinase

ScCKI-11

SCCCLR1C04G08.g

protein kinase

casein kinase

ScCKI-3

SCCCLR1022H07.g

protein kinase

cell cycle-related

ScCDK-11

SCBGLR1096C08.g

protein kinase

cell cycle-related

ScCDK-18

SCVPRT2081G05.g

protein kinase

cell cycle-related

ScCDK-3

SCRLFL1012B10.g

protein kinase

cell cycle-related

ScCDK-6

SCSBAM1084E01.g

protein kinase

MAPK/MAPKK/MAPKKK

ScMAPK-4

SCEPAM1020A03.g

protein kinase

other

ScATN1-2

SCVPCL6042B07.g

protein kinase

other

ScCyclin G-associated kinase-like protein-1

SCJFRZ2032C08.g

protein kinase

SNF-like kinase

ScCIPK-14

SCBFSB1046D04.g

protein kinase

SNF-like kinase

ScCIPK-16

SCMCRT2103B04.g

protein kinase

SNF-like kinase

ScCIPK-21

SCCCLR1C05B07.g

protein kinase

SNF-like kinase

ScCIPK-3

SCJLRZ1023H04.g

protein kinase

SNF-like kinase

ScCIPK-9

SCEPRZ1009C10.g

protein kinase

SNF-like kinase

ScOSA PK-1

SCCCST1004A07.g

protein kinase

SNF-like kinase

ScOSA PK-7

SCACLR2007G02.g

protein kinase

SNF-like kinase

ScPKABA1-1

SCRFLR1034G06.g

protein kinase

SNF-like kinase

ScPKABA1-3

SCJFRZ2032G01.g

protein kinase

SNF-like kinase

ScSnRK1-2

SCCCCL5002B10.g

protein kinase

undefined

ScPK-BI2

SCJLLR1054C03.g

protein kinase

undefined

ScPK-BIII7

SCMCSD2061D05.g

protein kinase

undefined unclassified

ScUPK-46 (CIPK)

SCCCLB1001D03.g

protein phosphatase

serine/threonine PPM family

PP2A/Catalytic Subunit

SCEZLR1052F07.g

protein phosphatase

serine/threonine PPM family

PP2A/Subunit A

SCEPRZ1010E06.g

protein phosphatase

serine/threonine PPM family

PP2C-like

SCEZHR1088E02.g

protein phosphatase

tyrosine phosphatase

Dual Specificity Protein Phosphatases (DSPP)

SCMCST1051F08.g

protein phosphatase

tyrosine phosphatase

Tyrosine Specific Protein Phosphatases (PTP)

SCSBHR1056H08.g

receptor

ethylene

EIN2

SCUTLR2023D06.g

transcription factor

CCAAT

ScCA2P5

SCCCLR1066G08.g

transcription factor

HGM (high mobility group protein)

SCBFAD1046D01.g

transcription factor

HLH (helix-loop-helix)

ScbHLH1

SCCCRZ1001H05.g

transcription factor

HLH (helix-loop-helix)

ScbHLH7

SCAGLR1021G10.g

transcription factor

homeobox

ScHB2

SCRLAM1010D08.g

transcription factor

homeobox

ScHB41

SCEZLB1010E10.g

transcription factor

hormone-related/auxin

ScABI40

SCCCLR1024F10.g

transcription factor

hormone-related/auxin

ScARF46

SCCCRZ1001G10.g

transcription factor

hormone-related/Aux/IAA

ScAUXI134

SCVPLR2005H03.g

transcription factor

hormone-related/Aux/IAA

SCJFRZ2009F04.g

factor transcription

hormone-related/Aux/IAA

SCJLLR1054C09.g

transcription factor

hormone-related/Aux/IAA

SCUTST3086B02.g

transcription factor

hormone-related/ethylene/AP2/ERE BP

ScEREB59

SCCCLR1001D10.g

transcription factor

hormone-related/ethylene/AP2/ERE BP

DRE binding factor 2

SCBGFL4052C11.g

transcription factor

hormone-related/ethylene

ScEIL1

SCCCRZ1004H12.g

transcription factor

hormone-related/ethylene

ScEIL2

SCCCRZ2C03D11.g

transcription factor

hormone-related/gibberellin

ScGRAS71

SCEPRZ1008F02.g

transcription factor

LIM (protein-protein interaction)

SCQGLR1085G10.g

transcription factor

MADS

ScMADS17

SCSFAD1124E07.g

transcription factor

MYB

ScMYB70

SCRURT2010A10.g

transcription factor

MYB

ScMYB120

SCCCLR2003E10.g

transcription factor

NAM (no apical meristem)

ScNAC27

SCRUAD1132D09.g

transcription factor

NAM (no apical meristem)

ScNAC51

SCACLR1130H08.g

transcription factor

zinc finger protein

ScYAB16

SCEZST3147A10.g

transcription factor

zinc finger protein

ScC3H84

SCCCCL4003D08.g

transcription factor

zinc finger protein

ScC3H95

SCQGRZ3011D06.g

transcription factor

zinc finger protein/alfin-like

ScALF9

SCCCRZ1002E08.g

stress

drought and cold response

Aquaporin (plasma membrane)

SCCCST3001H12.g

stress

drought and cold response

Aquaporin (plasma membrane)

SCEQRT2100B02.g

stress

drought and cold response

Aquaporin (plasma membrane)

SCCCLR1024C03.g

stress

drought and cold response

Aquaporin (tonoplast intrinsic protein)

SCCCRZ1001F02.g

stress

drought and cold response

Aquaporin (tonoplast intrinsic protein)

SCQGLR1085F11.g

stress

drought-induced

Dehydrin

SCCCLR2C01F06.g

stress

wound-induced

wound-responsive family protein