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Table 3 Intron/domain associations

From: Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

Species

Pfam Id

Domain name

CS Introns

AS introns

p-value

Bias

Arabidopsis

      
 

PF00303

Thymidylat_synt

0

14

2.20E-16

AS

 

PF00724

Oxidored_FMN

8

9

1.76E-07

AS

 

PF06487

SAP18

0

5

8.32E-07

AS

 

PF04628

Sedlin_N

2

6

1.27E-06

AS

 

PF00697

PRAI

1

5

4.74E-06

AS

 

PF00225

Kinesin

228

1

8.68E-06

CS

 

PF07847

DUF1637

12

8

1.21E-05

AS

 

PF03226

Yippee

13

8

1.85E-05

AS

 

PF00582

Usp

55

14

5.99E-05

AS

 

PF01716

MSP

1

4

6.52E-05

AS

 

PF01789

PsbP

12

7

8.07E-05

AS

 

PF07172

GRP

4

5

8.53E-05

AS

rice

      
 

PF00234

Tryp_alpha_amyl

0

11

2.33E-13

AS

 

PF00504

Chloroa_b-bind

14

12

6.19E-08

AS

 

PF00230

MIP

32

15

4.94E-07

AS

 

PF02913

FAD-oxidase_C

1

6

8.50E-07

AS

 

PF04172

LrgB

0

5

1.82E-06

AS

 

PF05564

Auxin_repressed

2

5

3.38E-05

AS

 

PF00011

HSP20

3

5

8.49E-05

AS

maize

      
 

PF01559

Zein

0

7

1.07E-06

AS

 

PF01040

UbiA

18

14

4.36E-05

AS

 

PF01596

Methyltransf_3

0

5

5.45E-05

AS

 

PF03763

Remorin_C

7

9

9.41E-05

AS

 

PF00297

Ribosomal_L3

5

8

9.96E-05

AS

 

PF00722

Glyco_hydro_16

10

10

0.0001406

AS

  1. An overview is given for all domains in Arabidopsis, rice and maize with a significant excess of either constitutive (CS) or alternative (AS) intron clusters.
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BMC Genomics

ISSN: 1471-2164

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