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Table 1 Data set and mapping results

From: Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana

 

All

All

Perfect match

Perfect Match

OMM

OMM

OMM excluding terminal miss match

OMM excluding terminal miss match

 

Unique

Reads

Unique

Reads

Unique

Reads

Unique

Reads

454 data set 1a

96,080

236,245

19,085

(19.9%)

69,071

(29.2%)

14,269

(14.9%)

32,808

(13.9%)

4,889

(5.1%)

11,162

(4.7%)

454 data set 2b

36,562

58,163

18,027

(49.3%)

18,027

(31.0%)

4,709

(12.9%)

6,081

(10.5%)

931

(2.5%)

1,091

(1.9%)

MPSS data setc

116,853

3,126,002

84,207

(72.1%)

2,501,573

(80.0%)

13,242

(11.3%)

240,355

(7.7%)

6,505

(5.6%)

112,299

(3.6%)

  1. (a) Jin et al. 2008
  2. (b) Lu et al. 2006
  3. (c) Lu et al. 2005