Skip to main content

Table 1 Oligonucleotide probe sequences for single-nucleotide polymorphism (SNP) markers

From: Two-stage genome-wide association study identifies integrin beta 5 as having potential role in bull fertility

NCBI SNP ID

Locus

Primers and detection probes

Rs29016875

C/T

Forward primer: 5'-GTCTGGTATTCCCATCTCTTTCAGA-3'

Reverse primer: 5'-TTACTGATTGAAGGGCAACTGTGT-3'

Probe 1: 5'-6FAM-TTTTCCACAGT TTATTGTG-3'

Probe 2: 5'-VIC-TTTTCCACAGC TTATTG-3'

Rs29015574

C/T

Forward primer: 5'-ACTCTGTCTCTGAGATTCGATTCAGT-3'

Reverse primer: 5'-CTGAAATCTTTCATTCCCTAGCTGATG-3'

Probe 1: 5'-6FAM-CTGAAAACTCTA TCTCTG-3'

Probe 2: 5'-VIC-CTGAAAACTCTG TCTCTG-3'

Rs29024867

G/C

Forward primer: 5'-TGGAGGAGTTCTTTAATGCTTATAAATG-3'

Reverse primer: 5'-GGAGGCACAAAATAGTTAACAGACATC-3'

Probe 1: 5'-6FAM-CTAAACC GATTTGTAATC-3'

Probe 2: 5'-VIC-CTAAACG GATTTGTAATC-3'

Rs41257187

C/T

Forward primer: 5'-CGAAATGGCTTCAAACCCTCTGTA-3'

Reverse primer: 5'-TGTTGAAGGTGAAATCCACAGTGT-3'

Probe 1: 5'-6FAM-CAGAAAGCCT ATCTCC-3'

Probe 2: 5'-VIC-AGAAAGCCC ATCTCC-3'