An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle

Table 4 Autocorrelation for derived allele frequency and the frequency of adjacent derived polymorphism for B. taurus and simulated populations

Chromosome	Angus	Holstein	Simulated 1	Simulated 2
1	0.054	0.004	0.301	0.17
2	0.141	0.16	-0.009	0.075
3	0.011	0.028	0.146	-0.146
4	-0.014	0.007	-0.069	-0.123
5	0.113	0.142	-0.003	0.007
6	0.073	0.036	-0.109	0.002
7	0.125	0.082	0.293	0.178
8	0.145	0.093	-0.063	0.055
9	-0.013	-0.005	0.086	-0.042
10	0.031	0.055	-0.211	-0.012
11	0.063	0.095	0.002	0.066
12	0.098	0.16	0.014	0.087
13	0.196	0.244	0.069	0.143
14	0.068	0.155	-0.081	-0.057
15	0.047	0.043	0.089	0.102
16	-0.017	0.024	-0.073	-0.023
17	-0.042	-0.083	0.002	0.014
18	0.055	0.077	-0.072	-0.271
19	0.007	-0.048	-0.046	-0.136
20	0.034	0.034	0.063	0.015
21	-0.037	-0.023	0.078	-0.132
22	0.029	0.026	-0.141	0.042
23	0.11	-0.035	-0.021	-0.161
24	-0.07	0.017	-0.055	-0.024
25	0.127	0.211	0.109	-0.12
26	0.082	0.252	-0.042	0.104
27	0.017	0.134	-0.155	0.049
28	-0.035	-0.1	0.035	-0.117
29	0.175	0.096	0.149	0.02
X	0.056	0.085	-	-
Average (s.e)	0.054 (0.012)	0.066 (0.016)	0.01 (0.022)	-0.008 (0.02)
Pvalue	p < 0.001	p < 0.001	p > 0.05	p > 0.05

ISSN: 1471-2164