Skip to main content

Table 1 Summary of tRNA gene predictions in the cow genome.

From: Analysis of the complement and molecular evolution of tRNA genes in cow

Amino acid/Pseudo genes

Numbers of tRNAscan-SE predictions

Numbers of RepMask3 tRNAs

RepMask % of removed tRNAs

Numbers of tRNAs without RE4

Numbers of tRNAs with 95% similarity

 

Chr1-X1

ChrUn2

Chr 1-X

ChrUn

Chr 1-X

ChrUn

Chr 1-X

ChrUn

Chr 1-X

ChrUn

Ala

293

41

216

30

73.7

73.2

77

11

18

2

Arg

811

120

755

109

93.1

90.8

56

11

18

5

Asn

57

24

25

4

43.9

16.7

32

20

20

11

Asp

316

44

238

29

75.3

65.9

78

15

12

5

Cys

12062

2061

12033

2059

99.8

99.9

29

2

25

0

Gln

142

30

79

15

55.6

50.0

63

15

14

9

Glu

2163

330

817

113

37.8

34.2

1346

217

14

10

Gly

7449

927

7141

881

95.9

95.0

308

46

22

10

His

193

44

178

36

92.2

81.8

15

8

10

8

Ile

59

9

29

5

49.2

55.6

30

4

17

3

Leu

144

30

92

11

63.9

36.7

52

19

12

4

Lys

300

57

93

20

31.0

35.1

207

37

14

7

Met

39

7

10

2

25.6

28.6

29

5

12

2

Phe

352

61

324

58

92.1

95.1

28

3

11

3

Pro

27

10

8

1

29.6

10.0

19

9

15

9

Ser

539

98

491

88

91.1

89.8

48

10

14

2

Thr

48

7

14

5

29.2

71.4

34

2

8

0

Trp

1558

191

1519

191

97.5

100.0

39

0

5

0

Tyr

822

145

799

144

97.2

99.3

23

1

15

0

Val

209

49

148

20

70.8

40.8

61

29

22

17

Pseudogenes

163490

25693

158551

25038

97.0

97.5

-

-

  

Total

191073

29978

183560

28859

96.1

96.3

2574

464

298

107

  1. 1Chr1-X refers to assembled cow chromosomes
  2. 2ChrUn refers to the unordered cow contigs
  3. 3RepMask refers to the RepeatMasker program
  4. 4RE refers to repetitive elements.