Table 3 Top 30 upregulated genes, in IVF blastocysts compared to CT blastocysts sorted by P-value
From: Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos
Probe set ID | Gene Title | Gene ID | P value | Fold change IVF/CT1 | Fold change IVF/CT4 |
|---|---|---|---|---|---|
Bt.28010.1.S1_at | Peptidase inhibitor 3, skin-derived (SKALP) | PI3 | 0.000000 | 5.58 | 9.12 |
Bt.21013.1.S1_at | Polo-like kinase 3 (Drosophila) | PLK3 | 0.000001 | 3.99 | 9.09 |
Bt.28223.1.S1_at | 20-beta-hydroxysteroid dehydrogenase-like | MGC127133 | 0.000009 | 2.13 | 1.71 |
Bt.9525.1.A1_at | Zinc finger protein 183 | ZNF183 | 0.000057 | 2.13 | 3.62 |
Bt.2892.1.S1_at | Fatty acid binding protein 7, brain | FABP7 | 0.00014 | 1.22 | 6.35 |
Bt.4430.1.S2_at | ATPase, H+ transporting, lysosomal V0 subunit a1 | ATP6V0A1 | 0.00014 | 1.89 | 1.93 |
Bt.5154.1.S1_at | Heat shock 70 kDa protein 1A | HSPA1A | 0.0002 | 4.14 | 7.17 |
Bt.15787.1.S1_at | Bcl-2 inhibitor of transcription | BIT1 | 0.0002 | 1.49 | 2.01 |
Bt.13544.2.S1_a_at | Zinc finger protein 410 | ZNF410 | 0.0003 | 2.01 | 1.90 |
Bt.2005.1.S1_at | LSM1 homolog, U6 small nuclear RNA associated | LSM1 | 0.0003 | 1.86 | 1.57 |
Bt.16291.1.A1_at | Testis expressed 12 | TEX12 | 0.0004 | 3.40 | 3.64 |
Bt.27854.1.S1_at | Nuclear factor, interleukin 3 regulated | NFIL3 | 0.0004 | 1.72 | 3.08 |
Bt.13928.2.S1_a_at | Sodium channel modifier 1 | SCNM1 | 0.0004 | 2.02 | 4.05 |
Bt.15334.2.A1_at | Signal transducer and activator of transcription 3 | STAT3 | 0.0005 | 4.71 | 16.06 |
Bt.12506.1.S1_at | Serpin peptidase inhibitor, E member 2 | SERPINE2 | 0.0005 | 1.52 | 1.42 |
Bt.20204.1.S1_at | Sjogren's syndrome/scleroderma autoantigen | SSSCA1 | 0.0005 | 1.61 | 2.93 |
Bt.20199.1.A1_at | DEAD (Asp-Glu-Ala-Asp) polypeptide 56 | DDX56 | 0.0006 | 1.45 | 1.79 |
Bt.3359.1.S1_at | General transcription factor IIF, polypeptide | GTF2F1 | 0.0009 | 1.53 | 1.98 |
Bt.2958.1.A1_at | Ubiquitin-conjugating enzyme E2A (RAD6 homolog) | UBE2A | 0.001 | 2.03 | 3.08 |
Bt.3002.1.S1_at | BUB3 budding uninhibited by benzimidazoles 3 | BUB3 | 0.001 | 1.27 | 1.62 |
Bt.6087.1.S1_at | Transmembrane 4 superfamily member 1 | TM4SF1 | 0.001 | 2.29 | 6.62 |
Bt.4737.1.S2_s_at | Prion protein | PRNP | 0.001 | 2.20 | 2.99 |
Bt.1854.1.S1_at | Intraflagellar transport 20 homolog (Chlamydomonas) | IFT20 | 0.001 | 1.65 | 2.30 |
Bt.5340.1.S1_s_at | Nucleoside-diphosphate kinase NBR-A | NBR-A | 0.002 | 1.42 | 1.76 |
Bt.8.1.S1_at | Keratin 10 (epidermolytic hyperkeratosis) | KRT10 | 0.002 | 1.98 | 3.39 |
Bt.27095.1.S1_at | Collaborates/cooperates with ARF protein | CARF | 0.002 | 1.53 | 2.97 |
Bt.5039.1.S1_at | High mobility group nucleosomal binding domain 3 | HMGN3 | 0.002 | 1.72 | 2.96 |
Bt.27874.1.S1_s_at | Phosphatidylserine receptor | PTDSR | 0.002 | 2.29 | 2.99 |
Bt.4595.1.S1_at | TSR2, 20S rRNA accumulation, homolog | TSR2 | 0.002 | 2.08 | 2.59 |
Bt.1505.1.S1_at | Sin3A-associated protein, 18 kDa | SAP18 | 0.003 | 2.24 | 2.48 |