Table 4 Novel zebrafish miRNAs. miRNAs identified in this study, their level of conservation and corresponding miRNA families.
From: Parallel DNA pyrosequencing unveils new zebrafish microRNAs
miRNA ID | miRNA sequence | Conservation | miRNA family | miRDeep prediction | Ensembl prediction |
|---|---|---|---|---|---|
miR_1 | AACAGTAAGAGTTTATGTGCTG | Non-conserved | - | √ | No |
miR _2 | CGGTGCAGGACTCCGCGGCTC | Non-conserved | - | √ | No |
miR _3 | AAGTGGCCTCTAAAAGTCTA | Non-conserved | - | √ | No |
miR _4 | TAATACTGCCTGGTAATGCCAT | Conserved | miR-429 | √ | √ |
miR _5 | ATCTCAGGTTCGTCAGCCCATG | Conserved | miR-1388 | √ | √ |
miR _6 | GGCTTGTTTTAAGTTGCCTGCG | Conserved | miR-1788 | √ | √ |
miR _7 | TTACAGGCTATGCTAATCTATG | Non-conserved | - | √ | No |
miR _8 | AAGGTCCAACCTCACATGTCC | Non-conserved | - | √ | No |
miR _9 | TGATTGTTTGTATCAGCTGTGT | Non-conserved | - | √ | No |
miR _10 | TAGGGGTATGATTCTCGC | Non-conserved | - | √ | No |
miR _11 | TAGGTAGTTTGATGTTGTTGGG | Conserved | miR-196 | √ | √ |
miR _12 | CGGCCCGTCCGGTGCGCTCGGAT | Non-conserved | - | √ | No |
miR _13 | TCACACCTACAATCCCTGGCA | Non-conserved | - | √ | No |
miR _14 | AAAGTGAAAGGTGACTGAGAC | Non-conserved | - | √ | No |
miR _15 | TAGGTAGTTTTATGTTGTTGGG | Conserved | miR-196 | √ | √ |
miR _16 | AGCAGCATTGTACAGGGCTTT | Conserved | miR-107 | √ | √ |
miR _17 | GTATGTGCCCTTGGACTACATT | Conserved | miR-455 | No | √ |
miR _18 | TATGTGTGTATCAATTGTGTGAAA | Non-conserved | - | √ | No |
miR_19 | GTAATGCTTCGACTGATTGGTG | Non-conserved | - | √ | No |
miR _20 | AGATTGGGGTGAGTTAGGGTG | Non-conserved | - | √ | No |
miR _21 | AGCTACATCTGAATACTGGGTCA | Conserved | miR-222 | √ | √ |
miR _22 | CCTCTCTGTGCTGCCATTTGGGAC | Non-conserved | - | √ | No |
miR _23 | ATGATTCGACTCATATGGTG | Non-conserved | - | √ | No |
miR _24 | AGCTCGTGTCCCAAGGCGCCT | Non-conserved | - | √ | No |
miR_25 | TCGTACCGTGAGTAATAGTGCA | Conserved | miR-126 | No | √ |