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Table 4 List of genes found within the Biological Process category of the Gene Ontology assignment with a significant difference in expression between normalized and native libraries.

From: Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery

Biological Process

Total counts normalized libraries

% counts

Total counts native libraries

% counts

P-value

apoptosis

6

2.08

8

0.18

***

biosynthetic process

14

4.84

2

0.04

***

cell adhesion

8

2.77

11

0.24

***

DNA repair

14

4.84

9

0.2

***

glycoloysis

7

2.42

8

0.18

***

immune response

7

2.42

6

0.13

***

metabolic process

26

9.0

4

0.09

***

muscle cell differentiation

95

32.9

4

0.09

***

positive regulation of apoptosis

3

1.04

6

0.13

**

protein folding

15

5.19

25

0.56

***

protein transport

4

1.38

17

0.38

**

proteolysis

6

2.08

21

0.47

**

regulation of cell shape

0

0

610

13.55

***

translation

37

12.80

1830

40.66

**

transport

40

13.84

211

4.69

***

  1. P-value significance; * = 0.05, ** = 0.01, *** = 0.001.