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Table 1 Regulated genes identified in the SSH libraries of thermally challenged Bathymodiolus thermophilus with significant database matches (only sequences with E-value above 0.005 are shown).

From: Molecular identification of differentially regulated genes in the hydrothermal-vent species Bathymodiolus thermophilus and Paralvinella pandorae in response to temperature

Homolog (protein); Blastx value Homolog species Insert size (bp) Accession number SSH library
Cell cycle, DNA repair, protein regulation and transcription
Elongation factor 1 alpha; 1e-14 Mytilus galloprovincialis 428 GH196568 forward
Elongation factor beta; 2e-05 Strongylocentrotus purpuratus 153 GH196577 forward
Elongation factor-2; 9e-89 Hutchinsoniella macracantha 577 GH196570 forward
S-cyclophilin; 2e-14 Gallus gallus 384 GH196575 forward
H3 histone; 4e-43 Mus musculus 538 GH196576 reverse
Myc homolog; 7e-10 Crassostrea virginica 704 GH196563 reverse
Respiratory chain
Cytochrome c oxidase subunit II; 5e-32 Lampsilis ornata 424 GH196573 reverse
Cytochrome c oxidase subunit III; 1e-20 Arbacia lixula 260 GH196584 reverse
ATP synthase; 3e-21 Bos taurus 415 GH196588 reverse
Metabolism
S-adenosylhomocysteine hydrolase 2e-60 Branchiostoma belcheri tsingtaunese 505 GH196574 forward
Cytosolic Lactate/malate dehydrogenase; 2e-14 Caenorhabditis elegans 421 GH196590 forward
Arginine kinase; Octopus vulgaris 135 GH196579 forward
Anhydrase carbonic 2; 2e-02 Oncorhynchus mykiss 114 GH196567 forward
Delta-5-desaturase; 4e-25 Strongylocentrotus purpuratus 195 GH196582 forward
Stress response and detoxication
Glutathione peroxidase; 0.001 Bombyx mori 101 GH196562 forward
Heat Shock Protein 90; 4e-21 Tetraodon nigroviridis 156 GH196561 forward
Cell communication, membrane receptors, immune system
Kalicludine 1; 3e-16 Anemonia sulcata 406 GH196560 reverse
Techylectin-5A; 8e-29 Tachypleus tridentatus 337 GH196558 reverse
Electron-transfer-flavoprotein; 4e-57 Strongylocentrotus purpuratus 535 GH196557 reverse
Itm1 protein, 4e-27 Xenopus laevis 179 GH196556 reverse
C1q-like adipose specific protein; 2e-07 Salvelinus fontinalis 570 GH196594 reverse
β-1,3-N-acetylglucosaminyltransferase 6; 5e-48 Homo sapiens 586 GH196571 reverse
Secreted protein, acidic, rich in cysteine SPARC; 2e-20 Artemia franciscana 523 GH196580 forward
Defensin; 1e-04 Haliotis discus hannai 105 GH196559 forward
Cytoskeleton production and maintenance
α-2-tubulin; 4e-27 Gecarcinus lateralis 348 GH196585 forward
Actin; 1e-35 Mytilus galloprovincialis 541 GH196578 forward
Adhesive plaque matrix protein; 6e-06 Mytilus galloprovincialis 291 GH196589 forward
Foot protein 2; 1e-6 Mytilus edulis 108 GH196581 forward
Pedal retractor muscle myosin; 6e-50 Mytilus galloprovincialis 426 GH196564 forward
Hemicentin; fibulin 6; 2e-14 Rattus norvegicus 304 GH196587 reverse
Ribosomal proteins
Ribosomal protein L3; 2e-55 Argopecten irradians 495 GH196591 forward
Ribosomal protein L4; 4e-80 Latimeria chalumnae 926 GH196586 forward
Ribosomal protein S14; 3e-04 Rattus norvegicus 256 GH196555 forward
Ribosomal protein S15; 1e-64 Argopecten irradians 465 GH196566 forward
Ribosomal protein S19; 2e-09 Chlamys farreri 362 GH196569 forward
Ribosomal protein S25; 1e-28 Crassostrea gigas 379 GH196583 forward
Ribosomal protein L15; 7e-16 Siniperca kneri 214 GH196565 reverse
QM protein; 7e-11 Apis mellifera 622 GH196572 reverse
Unknown function
CG33171-PC, isoform C; 4e-07 Drosophila melanogaster 615 GH196592 reverse
Repeat organellar protein-related; 1e-05 Plasmodium yoelii yoelii 765 GH196595 reverse
Unidentified sequences
39 sequences    GH196596 to GH196632
  1. Forward: genes over-expressed at 10°C versus 20°C;
  2. Reverse: genes over-expressed at 20°C versus 10°C.