Network | Interactions | Nodes | Edges | Dataset size | BioQuali | COMA |
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| | | | | Results | Time | Results | Time |
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E. coli[14] | TF-gene | 1499 | 3250 | - | 1 GI | 21s. | - | - |
E. coli[14] | [TF|Sigma]-gene | 1916 | 5140 | - | Cons. | 21s. | - | - |
E. coli[14] | [TF|Sigma]-gene | 1916 | 5142 | 45 [14] | 498 Pred. | 30s. | 10 LI | ≤ 1s |
E. coli[14] | [TF|Sigma]-gene | 1916 | 5142 | 255 [24] | 16 GI | 420s. | 14 LI | ≤ 1s |
Corynebacterium[15] | Protein-DNA | 573 | 806 | 65 [26] | 123 Pred. | 20s. | 5 LI | ≤ 1s. |
- This table summarizes the results and time performance (in seconds) obtained after the consistency analysis of the large-scale regulatory networks and experimental datasets used to illustrate the BioQuali plugin. We compared the results obtained with our plugin to those obtained with the COMA plugin using the same data. Using BioQuali, we obtained four types of results: local inconsistencies (LI), global inconsistencies (GI), only network consistency (Cons.), or predictions (Pred.). Using the COMA plugin only local inconsistencies are reported. The difference in the types of results is reflected in the time the plugins took to perform the computation. We tested the time performance with a standard PC.