Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing

Table 2 Exon junctions* identified by alignment of the GS FLX reads from the MAQC A and B Samples to the Human Genome compared with RefSeq and AceView

	RefSeq	MAQC	AceView
Total Number of Exon Junctions	190,325	137,899	360,517
Number of Exon Junctions not in RefSeq	0	22,193	170,557
Number of Novel Exon Junctions not in RefSeq or AceView	0	8,432	0

*Exon junctions were identified by the requirements that the reads align to the genome separated by standard GT-AG, GC-AG, or AT-AC introns.

ISSN: 1471-2164