Table 2 Summary of search functions and criteria available in the CellMiner resource.
From: CellMiner: a relational database and query tool for the NCI-60 cancer cell lines
| Â | Meta data | Download | Query | Intersection | Drug data | Mutation data | |
|---|---|---|---|---|---|---|---|
| Â | Â | Raw | Normalized | Â | Â | Â | Â |
Cell lines | NCI-60/DU145-RC0.1/both | NCI-60/DU145/RC0.1 | NCI-60/DU145/RC0.1 | NCI-60/DU145/RC0.1/both | NCI-60/DU145/RC0.1 | NCI-60 | NCI-60 (59 cell lines) |
Dataset selection (molecular type) | NA | DNA/RNA/Protein | DNA/RNA/Protein | DNA/RNA Protein | DNA/RNA/Protein | Drug sensitivity | DNA |
User select cell line criteria | All/tissue type selection | All | All/tissue type selection | All | All | All/tissue type selection | NA |
User select identifier type | NA | Raw | Normalized | gene or platform specific id, chromosome or genomic location | NA | NSC, Chemical name, Molecular formula | NA |
User select identifier list | NA | NA | NA | File attachment, list, single value | NA | File attachment, list, single value | NA |
Output data fields | Information on Patient, cell line, Experimental details | Quantification of image files | Log base2 | HUGO, Entrez Gene id, Gene Symbol, Chromosome, Cytoband, mRNA-Refseq, Protein-Refseq, Transcription start and Transcription-end | HUGO, Entrez Gene id, Gene Symbol, Chromosome, Cytoband, mRNA-Refseq, Protein-Refseq, Transcription start and Transcription-end | Chemical name, SMILES, molecular formula, molecular weight, mechanism of action | HUGO, Zygosity, CDS mutation, AA mutation, mutation characterization |
Output Format | HTML table of cell line information | zip | Text of log2 intensity values | HTML, MS-Excel, text file of log2 intensity values | Text file of log2 intensity values for each the matching datasets | HTML, MS-Excel, Text | HTML, Text |