Table 4 Comparative genomics of P. luminescens vs. P. asymbiotica ATCC43949 showing regions unique to each genome
Locus | Species | Gene Region | Size (Kb) | Products of interest |
|---|---|---|---|---|
1 | P. luminescens | plu0179-plu0190 | 8.5 | Carbapenem biosynthesis operon |
2 | P. luminescens | plu0404-plu0419 | 14.3 | Fimbrial proteins, adhesin |
3 | P. luminescens | plu0525-plu0541 | 16 | Hemolysins |
4 | P. luminescens | plu0545-plu0549 | 16.6 | Hemolysins |
5 | P. luminescens | plu0634-plu0643 | 14.2 | Hemolysins, peptidase |
6 | P. luminescens | plu0751-plu0767 | 20 | Proteins involved in antibiotic synthesis |
7 | P. luminescens | plu0777-plu0793 | 18 | Fimbrial proteins |
8 | P. luminescens | plu0802-plu0808 | 12.8 | Tc Insecticidal toxins |
9 | P. luminescens | plu0887-plu0900 | 20.7 | Pyocins, proteins involved in antibiotic synthesis |
10 | P. luminescens | plu0917-plu0925 | 8 | Lux-R transcriptional regulators |
11 | P. luminescens | plu0961-plu0968 | 29 | Tc Insecticidal toxins |
12 | P. luminescens | plu0991-plu0994 | 3.7 | Adhesin |
13 | P. luminescens | plu1030-plu1059 | 27.6 | Pili operon |
14 | P. luminescens | plu1063-plu1113 | 51 | Peptide synthetase, phage, transposable elements |
15 | P. luminescens | plu1204-plu1224 | 29.6 | Proteins involved in antibiotic synthesis, transposable elements |
16 | P. luminescens | plu1408-plu1413 | 6.7 | Hemolysins |
17 | P. luminescens | plu1514-plu1515 | 2.2 | Proteins involved in tetracycline resistance |
18 | P. luminescens | plu1536-plu1537 | 1.3 | Similar to Bt Insecticidal toxin |
19 | P. luminescens | plu2188-plu2200 | 14.1 | Proteins involved in antibiotic synthesis |
20 | P. luminescens | plu2213-plu2223 | 15.3 | Nematicidal protein |
21 | P. luminescens | plu2903-plu2960 | 33.6 | Phage |
22 | P. luminescens | plu3124-plu3129 | 6.2 | Proteins involved in toxin secretion |
23 | P. luminescens | plu3423-plu3489 | 47.5 | Phage |
24 | P. luminescens | plu3520-plu3535 | 46.5 | Proteins involved in antibiotic synthesis |
25 | P. luminescens | plu3667-plu3669 | 2.4 | RTX toxins |
26 | P. luminescens | plu3915-plu3925 | 13 | Proteins involved in antibiotic synthesis |
27 | P. luminescens | plu4165-plu4175 | 15.3 | Tc Insecticidal toxins TccB1, TccA1, pyocins |
28 | P. luminescens | plu4182-plu4186 | 9.1 | Tc Insecticidal toxins TccC6 |
29 | P. luminescens | plu4187-plu4197 | 11.4 | Anthraquinone biosynthesis |
30 | P. luminescens | plu4234-plu4243 | 10.5 | Photopexin A & B |
31 | P. luminescens | plu4488 | 2.8 | Insecticidal toxins TccC7 |
32 | P. luminescens | plu4621-plu4630 | 14.6 | Siderophore biosynthesis operon |
33 | P. luminescens | plu4812-plu4830 | 17.1 | Lipopolysaccharide biosynthesis |
34 | P. asymbiotica | pau00446-pau00458 | 21.2 | Hemolysin, Proteins involved in antibiotic synthesis |
35 | P. asymbiotica | pau00704-pau00699 | 8.3 | Fucose operon |
36 | P. asymbiotica | pau00881-pau00897 | 23.6 | Tc Insecticidal toxin TccC3 |
37 | P. asymbiotica | pau00911-pau00921 | 18.7 | Fatty acid biosynthesis operon |
38 | P. asymbiotica | pau01194-pau01201 | 16.8 | Proteins involved in antibiotic synthesis |
39 | P. asymbiotica | pau01335-pau01351 | 20.1 | RTX toxins |
40 | P. asymbiotica | pau02124-pau02142 | 16.3 | Insecticidal toxin TccZ |
41 | P. asymbiotica | pau02212-pau02264 | 88.7 | Syringomycin synthetase, insecticidal toxin, lectin |
42 | P. asymbiotica | pau02551 | 4.6 | Similar to syringomycin synthetase |
43 | P. asymbiotica | pau04327-pau04342 | 18.3 | Lipopolysaccharide biosynthesis |