Figure 6

De novo motif discovery. 12 motifs (second column) identified by a de novo motif discovery approach, sorted by their complexity value derived from the di-mer distribution (third column). The second and tenth motifs have a high similarity with known OCT4 related motifs. The fifth column lists the genes from the network that contain the motif within their promoter regions. Genes being suppressed by OCT4 are stated italic, genes being activated by OCT4 are stated bold. The last column shows selected similarity matched motifs from TRANSFAC (stated italic, [19]) and Jaspar (stated underlined, [31]) as received by STAMP [32] (see Additional files 8 and 9 for the full results).