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Table 6 Location of candidate donor splice sites within the 185/333 genes

From: A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups

  

Purpuratus splice model

Vertebrate splice model

Alignment Position1

Element1

Number of Sequences with positive sites+

Average Score

Number of Unique sites

Number of Sequences with positive sites+

Average Score

Number of Unique sites

7

Leader

92

0.9141

2

92

0.3802

2

56

Leader

92

3.6544

2

92

2.0761

2

662

Ex2

38

-0.8232

1

84

0.522

2

697

Ex2

2

3.6456

1

.

.

.

698

Ex2

.

.

.

24

0.9431

1

731

Ex3

3

2.116

1

.

.

.

738

Ex4

38

-0.9527

1

.

.

.

758

Ex4

.

.

.

74

0.3271

1

791

Ex4

1

0.3319

1

1

-0.2099

1

806

Ex4

51

2.1556

1

.

.

.

813

Ex5

3

-0.7904

1

.

.

.

888

Ex5

2

-0.7852

1

.

.

.

956

Ex5

5

2.1018

1

.

.

.

1001

Ex7

.

.

.

73

-0.2442

1

1031

Ex7

.

.

.

1

0.7604

1

1034

Ex7

3

-0.0971

1

3

-0.5625

1

1043

Ex7

.

.

.

90

-0.8223

1

1082

Ex7

92

-0.574

2

.

.

.

1103

Ex9

80

-0.0487

2

53

-0.8249

1

1107

Ex9

2

1.0598

1

2

-1.1971

1

1127

Ex10

.

.

.

2

-1.4636

1

1136

Ex10

11

0.4482

1

11

-0.5977

1

1148

Ex11

2

-0.6091

1

2

3.2707

1

1235

Ex13

34

-0.958

1

79

1.3481

3

1271

Ex13

76

-0.8621

2

.

.

.

1397

Ex16

38

-0.9555

1

38

1.4972

1

1406*

Ex17

35

-0.9532

1

35

1.1479

1

1412

Ex17

1

1.5242

1

1

-1.1572

1

1448

Ex17

3

-0.2399

1

3

1.3501

1

1464

Ex17

.

.

.

34

1.8815

1

1478*

Ex18

38

-0.3842

1

.

.

.

1529

Ex19

84

-0.8774

2

84

1.5862

2

1538

Ex19

29

-0.8506

1

29

1.2722

1

1646*

Ex22

79

-0.3887

3

.

.

.

1697

Ex23

.

.

.

2

1.4733

1

1895

Ex23

2

-0.1887

1

.

.

.

1946

Ex23

.

.

.

2

1.4733

1

2063

Ex24

14

-0.3657

1

.

.

.

2153

Ex25

92

3.1818

1

92

2.0725

1

2171

Ex25

92

2.4747

3

92

0.5568

3

2183

Ex25

.

.

.

92

1.4031

1

2215

Ex25

17

-0.8872

1

.

.

.

2287

Ex25

2

-0.0698

2

89

1.0827

6

  1. 1See [23]
  2. *Indicates that the GT is located at the beginning of the element
  3. +Total number of genes analyzed was 92.