SNP Type | Number | Percentage |
---|
Non Synonymous | 1344 | 17.85 |
Synonymous | 5097 | 67.69 |
Indel | 1089 | 14.46 |
Total | 7530 | 100 |
A/G | 1860 | 36.49 |
T/C | 1494 | 29.31 |
A/C | 551 | 10.81 |
A/T | 284 | 5.57 |
T/G | 381 | 7.47 |
G/C | 518 | 10.16 |
TriNucleotides | 9 | 0.19 |
Total | 7530 | 100 |
- Indels are Insertions and Deletions detected in the sequences with a range of 1 to 13 bases
- Two distinct subcategories of SNP have been identified:
- - Transition (ts) e.g. A⇔G; T⇔C that are mutations between two puric bases (A/G) or between two pyrimidic bases (C/T)
- - Transversion (tv) e.g. A⇔C; A⇔T; T⇔G; G⇔C that are mutations between puric and pyrimidic bases
- Trinucleotides are polymorphic sites that show three alleles at the same locus.