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Table 3 Comparison of methods

From: PAVE: Program for assembling and viewing ESTs

 

Contigsa

Singletons

Mate Splits

Contigs Splita

Contigs Merged

Timeb

PAVE

5601c

0

0

186

0

3 h 25 m

TGICL

8888

71

16583

3401

12

25 m

CAP3

8811

342

16621

3454

15

2 h 12 m

  1. a Does not include singletons.
  2. b PAVE and TGICL used 4 processors, whereas CAP3 is not parallelized so used one processor.
  3. c 3514 contigs are joined by n's where 53 of them are single-mate pair contigs.
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BMC Genomics

ISSN: 1471-2164

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