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Table 4 Distribution of Tol2 insertions depending on donor site

From: Genome-wide analysis of Tol2 transposon reintegration in zebrafish

Donor sitea

SqET33 donor

SqET33-E20 donor

 

Number

Frequencyb

Number

Frequencyb

Insertions in introns

50

30%

41

34%

Insertions in exons

15

9%

5

4%

Insertions in 5' endc

20

12%

15

12%

Insertions in 3' endc

22

13%

10

8%

Intergenic insertionsd

59

36%

50

41%

Mapped insertions

166

 

121

 
  1. a For SqET33, donor site data from the 1st and 2nd screens were combined. b Frequencies are calculated as the percentages of particular insertions. c We set a 5-kb interval as an arbitrary threshold for a regulatory region at the 5' and 3' ends of a transcription unit. d More than 5 kb upstream or downstream of a transcription unit. Insertions with no annotated tagged gene were also considered "intergenic".
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BMC Genomics

ISSN: 1471-2164

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