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Table 5 Summary of the detected regions represented twice or three times in the B. rapa genome based on alignment to Arabidopsis

From: Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa

Arabidopsis

AlignedB. rapa

Frequency in

Duplicated length in

linkage group

B. rapa genome

Arabidopsis genome (Mb)

 

Chromosome

Aligned from (Mb)

Aligned to (Mb)

   

1

4.4

6.8

A6, A8

2

2.4

 

6.8

7.3

A6, A6, A8

3

0.5

 

7.3

7.4

A6, A8

2

0.1

 

8.4

8.8

A8, A9

2

0.4

 

8.8

10.6

A7, A8, A9

3

1.8

 

10.6

10.8

A7, A9

2

0.2

 

10.8

10.9

A7, A8, A9

3

0.1

 

10.9

11.1

A8, A9

2

0.2

2

12.9

14.1

A3, A4

2

1.2

 

14.1

16.3

A3, A4, A5

3

2.2

 

16.3

18.6

A3, A5

2

2.3

3

2.5

4.5

A1, A5

2

2.0

 

4.5

7.5

A1, A3, A5

3

3.0

 

7.5

7.8

A3, A5

2

0.3

 

8.1

8.9

A3, A5

2

0.8

 

9.8

11.1

A5, A6

2

1.3

 

19.5

20.1

A4, A9

2

0.6

 

20.1

22.8

A4, A7, A9

3

2.7

4

8.7

8.8

A1, A3

2

0.1

 

9.9

12.3

A3, A8

2

2.4

 

12.3

17.8

A1, A3, A8

3

0.2

 

17.8

18.4

A1, A8

2

0.6

5

1.6

4.2

A2, A10

2

2.6

 

4.2

4.5

A2, A3, A10

3

0.3

 

4.5

5.9

A2, A10

2

1.4