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Table 6 Assignment of the linkage groups to chromosomes with karyotyping probes and remarks

From: Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa

Karyotyping markers (BACs)

Results

Linkage group

BAC ID

Location (cM)

FISH color

Remarksc

Anchored chromosome

A1

KBrH003F06

43.5

red

45S rDNA, 5S rDNA

Chr 7

 

KBrH003N18b

120.4

green

  

A2

KBrB013N08b

37.9

red

None

Chr 3

 

KBrB005J17

82.1

green

  

A3

KBrB056I08

27.4

red

Nor-bearing Chromosome

Chr 2

 

KBrS012D09

79.0

green

  

A4

KBrH004D08b

81.6

red

None

Chr 9

 

KBrB071M14

4.0

green

  

A5

KBrH003E08b

95.0

red

45S rDNA, CentBr2

Chr 4

 

KBrS004I08

21.0

green

  

A6

KBrB076B03b

47.5

red

45S rDNA

Chr 5

 

KBrH009H15

117.2

green

  

A7

KBrB084H08

45.3

red

None

Chr 6

 

KBrB021P15b

91.7

green

  

A8

KBrB006A15b

4.9

red

None

Chr 8

 

KBrH005C21

40.4

green

  

A9

KBrH143F19a

93.9

red

The biggest Chromosome

Chr 1

 

KBrH143K20a

22.4

green

  

A10

KBrB012O13b

50.5

red

5S rDNA

Chr10

 

KBrH053G06

11.7

green

  
  1. a[16]
  2. bSelected for FISH as in Figure 3.
  3. c[22–24]