Class | Gene --Possible function | Id/Sim% | Span | E-value |
---|---|---|---|---|
Cell struture | Â | Â | Â | Â |
 | dacC-Penicillin-binding protein 6 precursor/D-alanyl-D-alanine carboxypeptidase fraction C (Photorhabdus luminescens, plu1573) | 65/78 | 330 | 9E-35 |
 | fliM-Flagella MS-ring protein (P. luminescens, plu1941) | 90/98 | 244 | 7E-32 |
 | lpsE -Putative LPS biosynthesis protein (P. luminescens, plu4861) | 84/86 | 132 | 9E-18 |
 | ompF-Outer membrane protein (Xenorhabdus nematophila, XENPROT) | 88/91 | 227 | 2E-38 |
Regulation | Â | Â | Â | Â |
 | rseA-Sigma E factor negative regulator (Serratia proteamaculans, Spro_3674) | 66/80 | 165 | 7E-16 |
 | tilS-Putative cell cycle protein (P. luminescens, plu0689) | 62/81 | 189 | 4E-14 |
 | yijC-HTH-type transcriptional repressor (Escherichia coli, EcSMS35_4410) | 100/100 | 129 | 3E-16 |
Virulence | Â | Â | Â | Â |
 | virH-Putative toxin secretion transporter (Vibrio cholerae, VC0395_A1056) | 94/98 | 230 | 3E-39 |
 | xhlA-Putative hemolysin protein (X. nematophila, AY640584) | 75/86 | 258 | 4E-43 |
 | rtxC-RTX toxin activating protein (Vibrio vulnificus, VVA1030) | 77/93 | 210 | 5E-23 |
 | tcaC-Putative insecticidal toxin complex protein (X. nematophila, AJ308438) | 90/95 | 132 | 9E-21 |
Stress response | Â | Â | Â | Â |
 | gor-Glutathione reductase (Yersinia pseudotuberculosis, YPTS_4032) | 88/94 | 182 | 3E-12 |
 | msrA-Peptide methionine sulfoxide reductase (Y. pseudotuberculosis, YPTS_0481) | 62/79 | 179 | 5E-37 |
 | resP-Putative resistant protein (Enterobacter nickellidurans, AM003901) | 86/95 | 129 | 1E-15 |
 | surA-Peptidyl-prolyl cis-trans isomerase (P. luminescens, plu0611) | 81/93 | 182 | 7E-21 |
 | uspB-Universal stress protein (P. luminescens, plu0120) | 90/100 | 100 | 5E-11 |
 | xkIS-Putative transposase (Nitrosococcus oceani, Noc_1882) | 54/66 | 360 | 9E-30 |
 | rep-Putative rep protein (Salmonella enteritidis, SeSA_C0001) | 77/80 | 192 | 3E-21 |
 | res-Putative type III restriction enzyme, res subunit (Bacillus coagulans, BcoaDRAFT_2435) | 72/87 | 261 | 2E-31 |
 | rpoB-DNA-directed RNA polymerase (Y. pseudotuberculosis, YPTS_0304) | 98/100 | 240 | 3E-45 |
 | rrmB-16S ribosomal RNA methyltransferase (P. luminescens, plu4252) | 88/94 | 150 | 3E-18 |
Metabolism | Â | Â | Â | Â |
- Amino acid synthesis | lysC-Aspartate kinase (S. proteamaculans, Spro_4479) | 88/93 | 182 | 2E-30 |
- Cofactor biosynthesis | ubiE-Ubiquinone biosynthesis O-methyltransferase (S. proteamaculans, Spro_3270) | 100/100 | 107 | 8E-17 |
- Cofactor metabolism | cobJ-Precorrin-3b c17-methyltransferase (Escherichia blattae, REB001118) | 83/91 | 210 | 2E-27 |
- Glyoxylate pathway | aceE-Pyruvate dehydrogenase E1 component (P. luminescens, plu3623) | 92/96 | 156 | 2E-20 |
 | aceK-Bifunctional isocitrate dehydrogenase kinase/phosphatase protein (P. luminescens, plu4394) | 88/95 | 174 | 2E-22 |
 | dld-D-lactate dehydrogenase (P. luminescens, plu2848) | 83/92 | 251 | 4E-37 |
- Lipid synthesis | atoB-beta-ketoadipyl CoA thiolase (Escherichia fergusonii, EFER_1599) | 100/100 | 99 | 2E-05 |
- Nucleotide synthesis | purF-Amidophosphoribosyltransferase (P. luminescens, plu3167) | 97/97 | 111 | 7E-13 |
- Protein degradation | clpP-ATP-dependent Clp protease proteolytic subunit (Y. enterocolitica, YE3134) | 76/88 | 266 | 6E-45 |
- Protein folding | trxB-Predicted redox protein, regulator of disulfide bond formation (Yersinia pestis, YP_3227) | 88/90 | 123 | 2E-12 |
Nutrition | Â | Â | Â | Â |
- Ion uptake | znuA-ABC high-affinity zinc uptake transporter, periplasmic binding protein (P. luminescens, plu2115) | 81/87 | 141 | 2E-13 |
- Sugar uptake | malF-Maltose ABC transporter, permease protein (P. luminescens, plu0459) | 88/93 | 168 | 3E-22 |
Unknown | Â | Â | Â | Â |
 | xkst1-Hypothetical protein (Ruminococcus gnavus, RUMGNA_01513) | 79/87 | 141 | 9E-14 |
 | xkst2-Hypothetical protein (P. luminescens, plu2317) | 76/87 | 162 | 8E-9 |
 | xkst3-Hypothetical protein (P. luminescens, plu3301) | 84/93 | 165 | 4E-20 |
 | xkst4-No similarity to known genes |  |  |  |
 | xkst5-No similarity to known genes |  |  |  |
 | xkst6-No similarity to known genes |  |  |  |