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Table 2 Details of 23 genes of secondary metabolisms in Eucalyptus sequenced for SNP detection

From: Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways

  

Length (bp)a

   

Gene

aa identity (%)b

Exon

Intron

Total

Pathway

Coverage (%)

Coverage

dxr

75

652

1440

2092

MEP

80

E1-E6

dxs1

83

1158

668

1826

MEP

57

I4-E10

dxs2

82

588

184

772

MEP

30

E5-E7

hds

75

2001

2997

4998

MEP

93

E1-E17

hdr

83

1218

1982

3200

MEP

100

E1-E10

hmgr

73

890

1573

2463

MVA

75

E1-E2/E6-E12

mvk

62

1016

2023

3039

MVA

100

E1-E5

pmd

76

484

1472

1956

MVA

59

E1-E4

ipp

83

598

1138

1736

TPS

76

E2-E6

ggpps

73

731

448

1179

TPS

90

E1-E2

psy1

80

742

819

1561

TPS

80

E1-E4

psy2

75

617

882

1499

TPS

80

E1-E4

psy3

85

423

733

1156

TPS

40

E4-E6

gpps

63

568

4123

4691

TPS

75

E3-E8/E9-E10

fpps

73

910

2563

3473

TPS

100

E1-E12

smo

78

1486

861

2347

TPS

100

E1-E7

chs

66

1126

362

1488

FLAV

100

E1-E2

chi

70

808

357

1165

FLAV

100

E1-E3

f3h

72

1055

963

2018

FLAV

100

E1-E3

dfr

72

921

1439

2360

FLAV

100

E1-E6

lar c

65

569

2097

2666

FLAV

80

E1-E4

ans

71

952

216

1168

FLAV

100

E1-E2

anr

68

534

545

1079

FLAV

63

E1-E4

sum

75

20047

29885

49932

 

81

 
  1. a The length of sequence for exons, introns and the total are shown, the assigned pathway, an estimation of the proportion of the full length of the gene that was sequenced, the coverage of the gene, as compared to A. thaliana.
  2. b Compared to A. thaliana
  3. c lar is compared to P. trichocarpa as it does not exist in A. thaliana