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Table 3 Importsignal and cleavage-site prediction by Mitoprot of mitochondrion encoded genes.

From: The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

gene

Euplotes minuta

Euplotes crassus

Tetrahymena pyriformis

Paramecium aurelia

Blastocystis

(DMP)

Reclinomonas americana

Arabidopsis thaliana

Oryza sativa

nad1a

0.3731Y

 

0.9380Y

0.8786Y

0.0535N

0.2041N

0.0304N

0.0318Y

nad1b

0.0179N

 

0.0155N

0.0835N

    

nad2

0.9057Y*#

0.0229Y

0.1574N

0.9175Y

0.1689N

0.0435N

0.1369N

0.0497N

nad3

0.1585N

 

0.0175N

0.1252N

0.1418N

0.0504N

0.0154N

0.0042N

nad4

0.0642Y

0.7605N

0.6499N

0.4964N

0.5047Y

0.7783N

0.1300N

0.0805N

nad4L

0.0155N

0.0103N

0.0657N

 

0.3538N

0.2082Y

0.3533Y

0.3009N

nad5

0.1896N

0.0983N#

0.3453N

0.7374Y

0.5069N

0.3453Y

0.1255Y

0.1675Y

nad6

     

0.1870N

0.9123Y

0.7924N#

nad7

0.1782N

0.1914N

0.2221Y#

0.3188N

0.6599Y*#

0.6771N

0.6916N#

0.4186N

nad8

    

0.3912N

   

nad9

0.8492 Y#

0.9601Y

0.6518N

0.1990N

0.9159Y*

0.2870N

0.0587N

0.1915N

nad10

0.3770Y*

0.2760Y

0.1351Y

0.2149Y

 

0.2381N

  

nad11

    

0.0456N

0.0214N

  

cob

0.0081N

0.1385N

0.0323N

0.1088N

 

0.6913N

0.2913N*#

0.2609N*#

cox1

0.9306N

0.9803N

0.1062N

0.9618N*

 

0.0144Y*

0.2360N*

0.1908N*

cox2

0.0503N

0.0203N

0.4944Y

0.6414Y

 

0.0327N

0.0176N

0.3447N

cox3

     

0.0600Y

0.0605N

0.0222N

atp1

      

0.2910N

0.1920N

atp6

      

0.2621N

0.0085N

atp9

0.7172Y

 

0.3150N

  

0.1172Y

0.0397N

0.4941Y

yejR

0.4823N

0.1926N*#

0.1009N

0.9263Y

    

rps1

     

0.6830N

 

0.0249N

rps2

     

0.0626Y

 

0.5471Y

rps3

0.9987Y#

1.000Y*#

0.1184N*

0.0581N

0.6604N

0.1605Y

0.5611N

0.4670N

rps4

0.9898Y

0.9364Y*#

   

0.7786N

0.8602Y*#

0.9984Y*#

rps7

     

0.1327N

0.1334N

0.2046N

rps8

    

0.6514N

0.5082N

  

rps10

    

0.8777N

0.1099N

  

rps11

     

0.0295N

  

rps12

0.9998Y*#

0.9999Y*#

0.9351Y*

0.9683Y

0.9975Y*

0.3302N

0.2447N

0.1545N

rps13

  

0.1107N

0.6322N

0.9347N*

0.7738N*

 

0.3213Y

rps14

  

0.9868Y*

0.0604N

0.1811N

0.0376N*

  

rps19

  

0.9934N*

 

0.1278N

0.8812Y*

 

0.7065N*#

rpl1

     

0.0921N

  

rpl2

0.9997Y

0.9982Y

0.9975Y*

0.9854Y#

0.4959N*

0.4860Y*

0.9974Y*#

0.9972Y*#

rpl5

     

0.5942N

0.0114N

0.0437N

rpl6

  

0.5948N

 

0.6851N*

0.3297N

  

rpl10

     

0.8245N

  

rpl11

    

0.9694N

0.0835N

  

rpl14

0.9298Y*#

0.0484N

0.2054N

0.0817N

0.4278Y

0.1262N

  

rpl16

0.9982Y*#

0.9655Y*#

0.9947Y*#

0.8770N

0.7748Y*#

0.4554Y

0.9809Y*

0.7261Y*

rpl18

     

0.5305N*

  

rpl19

     

0.6495Y#

  

rpl20

     

0.9939Y#

  

rpl27

     

0.6704Y

  

rpl31

     

0.6276N

  

rpl32

     

0.9946N*#

  

rpl34

     

0.9508Y*

  
  1. Bold face: significant import probability due to Mitoprot prediction. italics: genes used by Ueda et al. [24]. Y: cleavage site predicted with Mitoprot. N: no cleavage site predicted with Mitoprot. Putative N-terminal targeting sequences for ribosomal proteins were also calculated using the programs Predotar [26] and TargetP [27] *: these proteins could be imported into mitochondria according to Predotar. #: these proteins could be imported into mitochondria according to TargetP.