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Table 2 Comparison of regions with Z>1 microsynteny to sequence-based synteny blocks.

From: Correlation of microsynteny conservation and disease gene distribution in mammalian genomes

Mouse Micro-synteny Interval

Dog Sequence Synteny Blocks

Rat Sequence Synteny Blocks

Human Sequence Synteny Blocks

Chr1 60 - 90 Mb

60 - 80 Mb = Chr37: 14.6 - 32.7 Mb,

80 - 90 Mb = Chr25: 40.6 - 48.1 Mb

60 - 85 Mb = Chr9: 58.5 - 84.4 Mb,

87 Mb - 90 Mb = Chr9: 84.2 - 87.0 Mb

60 - 90 Mb = Chr2: 203.6 - 234.6

Chr1 120 - 145 Mb

120 - 132 = Chr19: 31.4 - 43.3 Mb

132 - 133 Mb = Chr7: 8.7 - 9.3 Mb,

133 - 136 Mb = Chr38: 3.0 - 5.6 Mb,

136 - 140 Mb = Chr7: 3.0 - 7.1 Mb

120 - 145 Mb = Chr13: 30.9 - 57.8 Mb

120 - 132 Mb = Chr2: 125.6 - 138.4 Mb,

132 - 145 Mb = Chr1: 193.0 - 207.7 Mb

Chr1 155 - 175 Mb

155 - 168 Mb = Chr7: 19.4 - 33.9 Mb,

169 - 175 Mb = Chr38: 20.0 - 25.5 Mb

155 - 175 Mb = Chr13: 68.2 - 89.3 Mb

155 - 175 Mb = Chr1: 159.2 - 182.9 Mb

Chr2 45 - 85 Mb

45 - 53 Mb = Chr19: 52.6 - 56.7 Mb,

54 - 84 Mb = Chr36: 3.8 - 32.4 Mb,

84 - 85 Mb = Chr18: 41.4 - 41.9 Mb

45 - 85 Mb = Chr3: 25.6 - 68.4 Mb

45 - 84 Mb = Chr2: 145.2 - 188.3 Mb,

84 - 85 Mb = Chr11: 56.9 - 57.5 Mb

Chr2 115 - 140 Mb

115 - 127 = Chr30: 7.1 - 19.7 Mb,

127 - 129 Mb = Chr17: 37.5 - 40.1 Mb,

129 - 140 Mb = Chr24: 22.0 - 11.7 Mb

115 - 140 Mb = Chr3: 101.6 - 128.3 Mb

115 - 126 Mb = Chr15: 36.8 - 51.2 Mb,

126 - 127 Mb = Chr2: 95.6 - 97.0 Mb,

127 - 129 Mb = Chr2: 110.8 - 113.5 Mb,

129 - 140 Mb = Chr20: 1.4 - 13.8 Mb

Chr3 15 - 35 Mb

15 - 16 Mb = Chr24: 22.4 - 22.5 Mb,

16 - 19 Mb = Chr29: 16.2 - 18.7 Mb,

19 - 20 Mb = Chr23: 46.7 - 47.0 Mb

21 - 30 Mb = Chr34: 43.5 - 37.0 Mb

31 - 35 Mb = Chr34: 15.5 - 18.8 Mb

15 - 35 Mb = Chr2: 87.0 - 122.2 Mb

15 - 16 Mb = Chr20: 1.5 - 1.6 Mb,

16 - 19 Mb = Chr8: 64.0 - 67.0 Mb,

19 - 20 Mb = Chr3: 148.4 - 148.8 Mb,

20 - 35 Mb = Chr3: 176.7 - 182.5 Mb

Chr3 45 - 65 Mb

45 - 51 Mb = Chr19: 5.8 - 11.6 Mb,

52 - 55 Mb = Chr25: 3.5 - 8.0 Mb,

57 - 65 Mb = Chr23: 47.2 - 53.1 Mb

45 - 65 Mb = Chr2: 132.8 - 155.1 Mb

45 - 52 Mb = Chr4: 134.0 - 140.8 Mb,

52 - 55 Mb = Chr13: 36.0 - 41.1 Mb,

57 - 65 Mb = Chr3: 149.0 - 156.2 Mb

Chr3 55 - 75 Mb

55 - 57 Mb = Chr25: 7.6 - 8.0 Mb,

57 - 67 Mb = Chr23: 47.2 - 55.0 Mb,

67 - 75 Mb = Chr34: 28.0 - 35.3 Mb

55 - 75 Mb = Chr2: 144.4 - 166.1 Mb

55 - 57 Mb = Chr13: 36.0 - 36.3 Mb,

57 - 75 Mb = Chr3: 149.0 - 167.1 Mb

Chr4 30 - 65 Mb

30 - 35 Mb = Chr12: 52.6 - 49.6 Mb,

35 - 65 Mb = Chr11: 48.5 - 73.2 Mb

30 - 65 Mb = Chr5: 48.2 - 82.0 Mb

30 - 34 Mb = Chr6: 87.8 - 93.9 Mb,

34 - 45 Mb = Chr9: 27.3 - 38.4 Mb,

46 - 65 Mb = Chr9: 100.1 - 119.1 Mb

Chr4 105 - 125 Mb

105 - 107 Mb = Chr5: 57.1 - 58.9 Mb,

107 - 118 Mb = Chr15: 11.6 - 19.9 Mb,

118 - 125 Mb = Chr15: 3.2 - 7.9 Mb

105 - 125 Mb = Chr5: 127.3 - 144.8 Mb

105 - 125 Mb = Chr1: 37.2 - 55.5 Mb

Chr6 0 - 20 Mb

0 - 13 Mb = Chr14: 21.6 - 30.2 Mb

13 - 20 Mb - Chr14: 55.2 - 55.9 Mb

0 - 20 Mb = Chr4: 28.1 - 44.7 Mb

0 - 20 Mb = Chr7: 92.7 - 117.8 Mb

Chr9 40 - 70 Mb

40 - 54 Mb = Chr5: 13.7 - 27.7 Mb,

54 - 70 Mb = Chr30: 19.8 - 27.0 Mb

40 - 70 Mb = Chr8: 43.2 - 74.6 Mb

40 - 54 Mb = Chr11: 107.4 - 123.4 Mb,

54 - 70 Mb = Chr15: 59.4 - 78.3 Mb

Chr11 60 - 90 Mb

60 - 72 Mb = Chr5: 33.1 - 44.6 Mb,

72 - 90 Mb = Chr9: 33.3 - 51.0 Mb

60 - 90 Mb = Chr10: 46.4 - 78.6 Mb

60 - 76 Mb = Chr17: 1.1 - 17.7 Mb,

76 - 90 Mb = Chr17: 28.8 - 53.4 Mb

Chr11 100 - 120 Mb

100 - 120 Mb = Chr9: 3.6 - 24.5 Mb

100 - 120 Mb = Chr10: 89.0 - 109.7 Mb

100 - 104 Mb = Chr17: 39.6 - 45.2 Mb,

104 - 105 Mb = Chr7: 128.0 - 128.1 Mb,

106 - 120 Mb = Chr17: 60.5 - 79.2 Mb

Chr12 55 - 105 Mb

55 - 72 Mb = Chr8: 15.7 - 31.0 Mb,

72 - 102 Mb = Chr8: 36.6 - 65.4 Mb,

102 - 104 Mb = Chr8: 3.9 - 5.1 Mb,

104 - 105 Mb = Chr8: 65.4 - 66.4 Mb

55 - 105 Mb = Chr6: 74.3 - 127.9 Mb

55 - 72 Mb = Chr14: 34.2 - 52.3 Mb,

72 - 105 Mb = Chr14: 58.7 - 94.8 Mb

Chr15 65 - 104 Mb

65 - 76 Mb = Chr13: 31.6 - 41.2 Mb,

77 - 89 Mb = Chr10: 19.5 - 31.6 Mb,

89 - 104 Mb = Chr27: 3.8 - 18.6 Mb

65 - 104 Mb = Chr7: 103.1 - 142.6 Mb

65 - 76 Mb = Chr8: 132.9 - 146.2 Mb

77 - 89 Mb = Chr22: 36.0 - 51.2 Mb

89 - 104 Mb = Chr12: 33.5 - 54.9 Mb

Chr17 65 - 95 Mb

65 - 66 Mb = Chr3: 4.6 - 5.2 Mb,

66 - 72 Mb = Chr7: 72.2 - 78.8 Mb,

72 - 84 Mb = Chr17: 25.8 - 37.3 Mb,

84 - 90 Mb = Chr10: 48.4 - 54.8 Mb,

91 - 95 Mb = Chr7: 70.7 - 72.3 Mb

65 - 72 Mb = Chr9: 103.9 - 110.8 Mb,

72 - 77 Mb = Chr6: 17.9 - 24.1 Mb,

77 - 93 Mb = Chr6: 0.9 - 17.8 Mb,

93 - 95 Mb = Chr9: 110.7 - 112.5 Mb

65 - 66 Mb = Chr5: 109.2 - 110.0 Mb,

66 - 71 Mb = Chr18: 2.5 - 9.8 Mb,

72 - 93 Mb = Chr2: 29.0 - 51.2 Mb,

94 - 95 Mb = Chr18: 0.9 - 2.5 Mb

Chr19 30 - 65 Mb

30 - 34 Mb = Chr26: 38.4 - 41.9 Mb,

34 - 65 Mb = Chr28: 7.3 - 32.4 Mb

30 - 65 Mb = Chr1: 233.7 - 267.8 Mb

30 - 32 Mb = Chr10: 51.9 - 54.5 Mb,

32 - 65 Mb = Chr10: 89.2 - 121.2 Mb

  1. Sequence-based synteny blocks were identified from the Ensembl genome browser. The intervals are listed according to positions in the mouse genome, with the positions of synteny in the other genomes listed following the "=" sign. The specific region of synteny in the other species is listed following the chromosome number and a ':'. Forward to forward alignments are show in normal text, forward to reverse alignments are shown in italics.