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Table 3 Stepwise linear regression results (effect size coefficient, standard error, and p-value) for each variable, by data set. P-values < 10-50 are shown as 0.

From: Alu repeats increase local recombination rates

Data Set

 

Interval length

Regional log10(r)

Interval G+C

Core motif

Extended motif

Hot spot

AluY presence

Diversity panel: Africa, fixed

Coefficient

-1.07 × 10-7

1.29

-2.69

-0.0439

-0.0725

0.250

0.395

 

Std. Err.

2.27 × 10-5

0.0919

0.978

0.0572

0.104

0.202

0.182

 

p-value

0.996

7.3 × 10-25

0.0071

0.44

0.49

0.22

0.033

HapMap YRI, fixed

Coefficient

-6.17 × 10-6

0.824

0.625

0.00891

0.0296

0.356

0.0221

 

Std. Err.

1.66 × 10-6

0.00248

0.0408

0.00146

0.00283

0.00570

0.00579

 

p-value

2.0 × 10-4

0

0

9.4 × 10-10

0

0

1.4 × 10-4

HapMap CEU, fixed

Coefficient

2.90 × 10-6

0.815

0.555

0.00837

0.0378

0.389

0.0320

 

Std. Err.

1.86 × 10-6

0.00221

0.0443

0.00154

0.00304

0.00624

0.00611

 

p-value

0.12

0

0

6.1 × 10-8

0

0

1.7 × 10-7