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Table 3 Codon usage for 12 protein-coding genes of the mitochondrial genome of Rotaria rotatoria

From: Eurotatorian paraphyly: Revisiting phylogenetic relationships based on the complete mitochondrial genome sequence of Rotaria rotatoria (Bdelloidea: Rotifera: Syndermata)

Codon (aa)

nc

%

Codon (aa)

nc

%

Codon (aa)

nc

%

Codon (aa)

nc

%

TTT(F)

319

9.5

TCT(S)

105

3.1

TAT(Y)

157

4.7

TGT(C)

32

1.0

TTC(F)

50

1.5

TCC(S)

7

0.2

TAC(Y)

20

0.6

TGC(C)

2

0.1

TTA(L)

367

11.0

TCA(S)

20

0.6

TAA(*)

8

0.2

TGA(W)

62

1.9

TTG(L)

79

2.4

TCG(S)

6

0.2

TAG(*)

2

0.1

TGG(W)

24

0.7

CTT(L)

58

1.7

CCT(P)

49

1.5

CAT(H)

49

1.5

CGT(R)

27

0.8

CTC(L)

3

0.1

CCC(P)

5

0.1

CAC(H)

1

0.0

CGC(R)

1

0.0

CTA(L)

42

1.3

CCA(P)

8

0.2

CAA(Q)

22

0.7

CGA(R)

7

0.2

CTG(L)

6

0.2

CCG(P)

4

0.1

CAG(Q)

12

0.4

CGG(R)

1

0.0

ATT(I)

267

8.0

ACT(T)

55

1.6

AAT(N)

92

2.7

AGT(S)

36

1.1

ATC(I)

23

0.7

ACC(T)

0

0.0

AAC(N)

13

0.4

AGC(S)

8

0.2

ATA(M)

180

5.4

ACA(T)

22

0.7

AAA(K)

56

1.7

AGA(S)

90

2.7

ATG(M)

74

2.2

ACG(T)

6

0.2

AAG(K)

39

1.2

AGG(S)

55

1.6

GTT(V)

147

4.4

GCT(A)

61

1.8

GAT(D)

68

2.0

GGT(G)

54

1.6

GTC(V)

19

0.6

GCC(A)

6

0.2

GAC(D)

9

0.3

GGC(G)

15

0.4

GTA(V)

126

3.8

GCA(A)

20

0.6

GAA(E)

44

1.3

GGA(G)

59

1.8

GTG(V)

38

1.1

GCG(A)

11

0.3

GAG(E)

36

1.1

GGG(G)

66

2.0

  1. The letter in parenthesis indicates one-letter abbreviation of the amino acids.
  2. * Stop (termination) codon.