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Table 1 Estimates of the best amino acid models for the individual Bayesian phylogenies

From: Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon

Protein

TL

Shape parameter α

P. Invariant sites

Model

RepA

11.987 (11.128 12.906)

0.933 (0.776 1.102)

0.065 (0.022 0.107)

WAG (PP 1)

RepB

19.952 (18.617 21.323)

1.721 (1.487 1.983)

0.0698 (0.041 0.103)

WAG (PP 1)

RepC

17.678 (16.49 18.922)

1.122 (0.993 1.265)

0.068 (0.040 0.098)

JTT (PP 1)

  1. The amino acid matrix with the highest posterior probability, the estimated proportion of invariable sites, and the estimated gamma shape parameter for each Rep protein.
  2. Abbreviations. TL: total length of the phylogeny, PP: posterior probability. The values in parentheses is the 95% Cred. Interval.
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BMC Genomics

ISSN: 1471-2164

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