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Table 2 Differentially expressed genes involved in ER stress signalling and UPR in response to UCB treatment in SH-SY5Y cells.

From: A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells

Probe_Id

Gene_Name

Gene_Symbol

FC

Location

 

Stress sensing and signalling

   

218696_at

eukaryotic translation initiation factor 2-alpha kinase 3

EIF2AK3

2.2

ER membrane

 

Folding (Chaperones and oxidoreductase)

   

200068_s_at

Calnexin

CANX

1.5

ER membrane; cell surface

202843_at

DnaJ (Hsp40) homolog, subfamily B, member 9

DNAJB9

4.4

ER lumen

202842_s_at

DnaJ (Hsp40) homolog, subfamily B, member 9

DNAJB9

4.0

ER lumen

221782_at

DnaJ (Hsp40) homolog, subfamily C, member 10

DNAJC10

1.8

ER lumen

220012_at

ERO1-like beta (S. cerevisiae)

ERO1LB

2.1

ER; ER membrane

210627_s_at

glucosidase I

GCS1

1.5

ER lumen

200599_s_at

heat shock protein 90 kDa beta (Grp94), member 1

HSP90B1

1.5

ER lumen; cell surface

211936_at

heat shock 70 kDa protein 5 (glucose-regulated protein, 78 kDa)

HSPA5

2.3

ER lumen; cell surface

200825_s_at

hypoxia up-regulated 1

HYOU1

2.2

ER; ER lumen

203857_s_at

protein disulfide isomerase family A, member 5

PDIA5

1.7

ER; ER lumen

208639_x_at

protein disulfide isomerase family A, member 6

PDIA6

1.5

ER; ER lumen

207668_x_at

protein disulfide isomerase family A, member 6

PDIA6

1.4

ER; ER lumen

217716_s_at

Sec61 alpha 1 subunit (S. cerevisiae)

SEC61A1

1.6

ER membrane

219499_at

Sec61 alpha 2 subunit (S. cerevisiae)

SEC61A2

1.4

ER membrane

201916_s_at

SEC63 homolog (S. cerevisiae)

SEC63

1.5

ER membrane

 

Vesicle-mediated transport

   

202710_at

BET1 homolog (S. cerevisiae)

BET1

1.6

ER; Golgi;membrane

204017_at

KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3/ERD2L3

KDELR3

1.6

ER; ER membrane

207264_at

KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3

KDELR3

1.3

ER; ER membrane

212245_at

multiple coagulation factor deficiency 2

MCFD2

1.5

ER-Golgi intermediate compartment; Golgi; ER

215548_s_at

sec1 family domain containing 1

SCFD1

1.5

Golgi; ER; ER membrane; nucleus

201583_s_at

Sec23 homolog B (S. cerevisiae)

SEC23B

1.8

COPII vesicle coat; ER; Golgi

210293_s_at

Sec23 homolog B (S. cerevisiae)

SEC23B

1.6

COPII vesicle coat; ER; Golgi

202375_at

SEC24 related gene family, member D (S. cerevisiae)

SEC24D

2.1

COPII vesicle coat; ER; Golgi

215209_at

SEC24 related gene family, member D (S. cerevisiae)

SEC24D

1.6

COPII vesicle coat; ER; Golgi

200945_s_at

SEC31 homolog A (S. cerevisiae)

SEC31A

1.6

COPII vesicle coat; ER

200970_s_at

stress-associated endoplasmic reticulum protein 1

SERP1

1.9

ER; membrane

200971_s_at

stress-associated endoplasmic reticulum protein 1

SERP1

1.7

ER; membrane

200891_s_at

signal sequence receptor, alpha (translocon-associated protein alpha)

SSR1

1.6

ER; membrane

200087_s_at

transmembrane emp24 domain trafficking protein 2

TMED2

1.4

Golgi; ER-Golgi intermediate compartment

208757_at

transmembrane emp24 protein transport domain containing 9

TMED9

1.6

ER; ER membrane

212352_s_at

transmembrane emp24-like trafficking protein 10 (yeast)

TMED10

1.4

Golgi; ER-Golgi intermediate compartment

201398_s_at

translocation associated membrane protein 1

TRAM1

1.8

ER; membrane

 

Degradation

   

218333_at

Der1-like domain family, member 2

DERL2

1.6

ER membrane

203279_at

ER degradation enhancer, mannosidase alpha-like 1

EDEM1

2.1

ER lumen membrane

217168_s_at

homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1

HERPUD1

4.1

ER membrane

202061_s_at

sel-1 suppressor of lin-12-like (C. elegans)

SEL1L

2.1

ER membrane

  1. Genes are sub-categorized according to their GO Biological Process annotation. Fold changes (FC) are fold differences for cells treated with Bf 140 nM versus cells grown in DMSO 0.6% (controls) for 24 h. Affymetrix Probe Set-IDs, gene names and symbol, fold change (FC), and cellular location are indicated.