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Figure 4 | BMC Genomics

Figure 4

From: De novo 454 sequencing of barcoded BAC pools for comprehensive gene survey and genome analysis in the complex genome of barley

Figure 4

Effect of different parameter settings on assemblies. Heat maps visualizing the assembly results of 454 sequences of the four complete reference BACs (top: set 1; bottom: set 2) by MIRA under different combinations of hss (hash saving steps, X-axis) and bph (bases per hash, Y-axis). BACs from left to right are: 184G09, 259I16, 631P08, 711N16. Black fields indicate the hss/bph combinations resulting in the largest contig for the respective BAC, dark to light gray fields mark values producing a contig with >90%, >50% and <50% of the largest contig length, respectively. White fields represent meaningless combinations (hss > bph).

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BMC Genomics

ISSN: 1471-2164

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