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Table 1 Measures of genetic diversity and divergence obtained for the two candidate genes

From: Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations

Gene/Domain

Strain

Fragment size (bp)

N

Hap

S

Si

NS

Hd

Ï€

θ W

k

K

Fst

Cadherin

(CAD)

Whole

sequence*

Susceptible

Resistant

1467

20

24

13

5

67

65

0

1

3

3

0.932

0.435

0.023

0.017

0.013

0.012

32.363

25.033

35.254

0.186

 

SD2

Susceptible

Resistant

75

22

24

3

2

2

2

0

0

0

0

0.567

0.391

0.013

0.010

0.007

0.007

0.961

0.783

1.136

0.233

 

SD2-SD3

Susceptible

Resistant

69

22

24

3

2

2

1

1

0

0

0

0.558

0.391

0.009

0.006

0.008

0.004

0.610

0.391

0.568

0.119

 

SD3

Susceptible

Resistant

268

22

24

3

2

12

8

4

0

1

0

0.541

0.391

0.016

0.012

0.012

0.008

4.264

3.130

4.705

0.214

 

SD3-SD4

Susceptible

Resistant

77

22

24

2

2

3

3

0

0

2

1

0.485

0.391

0.019

0.015

0.011

0.010

1.455

1.174

1.705

0.229

 

SD4

Susceptible

Resistant

279

22

24

4

2

18

14

4

0

0

0

0.571

0.391

0.026

0.020

0.018

0.013

7.273

5.478

8.080

0.211

 

SD4-SD5

Susceptible

Resistant

69

22

24

3

2

6

5

1

0

0

0

0.541

0.391

0.038

0.028

0.024

0.019

2.602

1.957

2.795

0.185

 

SD5

Susceptible

Resistant

246

10

22

4

4

17

14

1

0

1

1

0.733

0.398

0.034

0.020

0.024

0.016

8.422

5.039

8.164

0.176

 

SD5-SD6

Susceptible

Resistant

63

10

22

2

2

1

1

0

0

0

0

0.533

0.368

0.008

0.006

0.006

0.004

0.533

0.368

0.555

0.187

 

SD6

Susceptible

Resistant

279

10

22

2

2

15

15

0

0

1

1

0.533

0.368

0.029

0.020

0.019

0.015

8.000

5.519

8.318

0.187

 

SUP6

Susceptible

Resistant

42

10

22

2

2

1

1

0

0

0

0

0.533

0.368

0.013

0.009

0.008

0.007

0.533

0.368

0.555

0.187

Leucine aminopeptidase (LAP)

Susceptible

Resistant

1657

22

24

12

5

29

6

0

0

9

2

0.900

0.688

0.006

0.001

0.005

0.001

10.069

2.025

8.909

0.321

  1. N, number of alleles sampled; Hap, number of different haplotypes; S, number of segregating sites; Si, number of singletons; NS, number of non-synonymous mutations; Hd, haplotype diversity; π, nucleotide diversity (per site); θ W , Watterson's mutation parameter θ estimated from S (per site); k; average number of nucleotide differences within strain; K, average number of nucleotide differences between strains; Fst, genetic differentiation between strains.
  2. * Some measures (e.g. S and NS) are different between the whole sequence and the total of all sequences because of a different number of sampled haplotypes.