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Table 2 Oligonucleotide probes design.

From: Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species

 

NN

N

TCs

Unigenes

34,477

29,627

33,638

Designed oligonucleotide probes

17,843

29,393

32,771

Probes specific for 1 sequence

16,990

28,187

25,658

Probes recognizing 2-3 sequences

801

1,177

6,326

Probes recognizing 4-5 sequences

52

29

787

Oligonucleotide probes mapping to genome

16,500

25,879

26,578

Probes mapping to a unique position

14,146

21,869

21,831

Probes mapping to a 2-3 positions

1,594

2,654

2,848

Probes mapping to 4-5 positions

301

506

566

Probes mapping to more than 5 positions

459

850

1,333

Probes not mapping to genome

1,343

3,514

6,193

  1. Oligonucleotide probes design was performed on the unigenes identified in the non-normalized (NN) and normalized (N) libraries and on the TCs comprised in VvGI.