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Table 3 Disruption of annotated coding regions by CREE

From: Comparative analysis of two Neisseria gonorrhoeae genome sequences reveals evidence of mobilization of Correia Repeat Enclosed Elements and their role in regulation

 

FA1090*

CREE?†

NCCP11945‡

CREE?†

previously reported:

    

NMA2121

not present

n/a

NGK_1900

Yes

NMB0397

NGO1564**

no

NGK_1865/7

Yes

cvaB

unannotated††

yes

NGK_0171

Yes

NMA0059

unannotated

yes

NGK_2501

Yes

NMA0530

NGO2162

no

NGK_2641

No

new from this study:

    
 

NGO0243

yes

NGK_0377

Yes

 

NGO2104

yes

NGK_2573

Yes

 

NGO1597

yes

NGK_1901‡‡

No

  1. * Locus annotation from N. gonorrhoeae strain FA1090 [GenBank: RefSeq NC_002946].
  2. † Presence of a CREE.
  3. ‡ Locus annotation from N. gonorrhoeae strain NCCP11945 [GenBank: RefSeq NC_011035].
  4. ¶Differences in annotation place this CREE 21 bp 5' of NGK_1900 rather than disrupting the CDS.
  5. ** This CDS disrupts the NMB0397 orthologue in this strain.
  6. †† The corresponding sequence in this strain has a 954 bp deletion relative to NGK_0171.
  7. ‡‡ This CDS is annotated on the reverse complement strand from NGO1597. By this annotation the site of CREE insertion would be 3' of the CDS.