Table 5 Edit cluster for bidirectional promoters. The word-based clusters for the two most overrepresented words for the bidirectional promoters according to the edit distance metric. Rank 1 refers to word TCGCGCCA and Rank 2 to TCCCGGGA.
From: Word-based characterization of promoters involved in human DNA repair pathways
(a) Rank 1 | ||||||||
|---|---|---|---|---|---|---|---|---|
Word | S | ES | O | EO | Sln(S/ES) | RevComp. | Position | Palindrome |
TCGCGCCA | 4 | 0.918299 | 4 | 0.9375 | 5.88611 | TGGCGCGA | 12538 | No |
TCGCCCCA | 3 | 0.805161 | 3 | 0.820513 | 3.94598 | TGGGGCGA | 2834 | No |
TAGCTCCA | 2 | 0.352982 | 2 | 0.357143 | 3.46897 | TGGAGCTA | NA | No |
TCTCGCGA | 2 | 0.438673 | 2 | 0.444444 | 3.0343 | TCGCGAGA | 4937 | No |
TCGCCACA | 2 | 0.455424 | 2 | 0.461538 | 2.95935 | TGTGGCGA | 4669 | No |
... | Â | Â | Â | Â | Â | Â | Â | Â |
(b) Rank 2 | ||||||||
Word | S | ES | O | EO | Sln(S/ES) | RevComp. | Position | Palindrome |
TCCCGGGA | 8 | 3.97165 | 8 | 4.26667 | 5.60208 | TCCCGGGA | 2 | Yes |
TCCCGGCT | 6 | 2.54354 | 6 | 2.66667 | 5.14921 | AGCCGGGA | NA | No |
ATCCGGGA | 2 | 0.395077 | 2 | 0.4 | 3.24364 | TCCCGGAT | NA | No |
TCTCGCGA | 2 | 0.438673 | 2 | 0.444444 | 3.0343 | TCGCGAGA | 4937 | No |
TTCCTGGA | 2 | 0.493082 | 2 | 0.5 | 2.80045 | TCCAGGAA | 9505 | No |
... | Â | Â | Â | Â | Â | Â | Â | Â |