Table 6 Edit cluster for unidirectional promoters. The word-based clusters for the two most overrepresented words for the unidirectional promoters according to the edit distance metric. Rank 1 refers to word ACCCGCCT and Rank 2 to CTTCTTTC.
From: Word-based characterization of promoters involved in human DNA repair pathways
(a) Rank 1 | ||||||||
|---|---|---|---|---|---|---|---|---|
Word | S | ES | O | EO | Sln(S/ES) | Rev.Comp. | Position | Palindrome |
ACCCGCCT | 4 | 0.716577 | 4 | 0.727273 | 6.87826 | AGGCGGGT | 19440 | No |
AGCCGGCT | 3 | 0.805285 | 3 | 0.818182 | 3.94551 | AGCCGGCT | 14 | Yes |
AGGCGCCT | 3 | 1.11427 | 3 | 1.13636 | 2.97124 | AGGCGCCT | 92 | Yes |
AAGCGCCT | 4 | 2.15617 | 4 | 2.22727 | 2.47184 | AGGCGCTT | 5872 | No |
ACCTGCAT | 2 | 0.592063 | 2 | 0.6 | 2.43458 | ATGCAGGT | NA | No |
... | Â | Â | Â | Â | Â | Â | Â | Â |
(b) Rank 2 | ||||||||
Word | S | ES | O | EO | Sln(S/ES) | Rev.Comp. | Position | Palindrome |
CTTCTTTC | 5 | 1.7686 | 5 | 1.81818 | 5.19624 | GAAAGAAG | 13567 | No |
TCTTCTTC | 4 | 1.30438 | 4 | 1.33333 | 4.48225 | GAAGAAGA | NA | No |
CCTCTTTA | 2 | 0.282982 | 2 | 0.285714 | 3.91104 | TAAAGAGG | NA | No |
CTTTTTCA | 3 | 0.917377 | 3 | 0.933333 | 3.55455 | TGAAAAAG | NA | No |
GTTCATTC | 2 | 0.359828 | 2 | 0.363636 | 3.43055 | GAATGAAC | NA | No |
... | Â | Â | Â | Â | Â | Â | Â | Â |