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Table 1 SNPs in various C. briggsae strains identified by ssahaSNP (in comparison to AF16).

From: A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae

  HK104 VT847 HK105 PB800
Sequence traces examined 13,632 14,976 2,112 384
Traces aligned by SSAHA 7,530 9,213 1,680 123
Total aligned base pairs 4,562,172 5,761,972 1,038,254 75,508
Total unique aligned base pairs 3,884,127 4,327,725 867,552 63,434
Unique SNP loci detected 23,829 9,111 5,164 322
Apparent SNP density (per kb) 6.13 2.11 5.95 5.08
  1. Total aligned base pairs include redundant matches due to sequence overlaps (between 15% and 25%) in sequence data. The SNP density is based on the number of uniquely aligned base pairs.