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Table 4 List of small indels tested by PCR.

From: A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae

Chr Indel ID Location (cM) Ultra_contig Predicted indel size (bp) Predicted amplicon Status
      AF16 HK104  
1 bhP41 unknown cb25.fpc4180 16 242 258 Inconsistent products
  bhP42 unknown cb25.fpc4184 15 252 267 True
  bhP19 0.7 cb25.fpc2695 32 247 215 True
  bhP43 14 cb25.fpc3857b 12 245 257 Multiple products
  bhP7 28.6 cb25.fpc2032 7 246 239 True
  bhP1 29.2 cb25.fpc3441 10 250 260 True
  bhP29 ~52 cb25.fpc4140 17 248 231 True
2 bhP20 2.4 cb25.fpc4168 21 248 227 Inconsistent products
  bhP6 ~8 cb25.fpc0071 11 973 962 True
  bhP2 ~10 cb25.fpc3052a 7 243 236 True
  bhP33 ~10 cb25.fpc3052a 44 245 201 Inconsistent products
  bhP28 11.9-13.1 cb25.fpc0011 22 249 227 Inconsistent products
  bhP32 11.9-13.1 cb25.fpc0011 21 250 271 True
  bhP21 23.3-28.6 cb25.fpc0058 20 251 231 True
  bhP44 ~38 cb25.fpc1402a 12 312 324 Failed PCR in HK104
  bhP8 49.9 cb25.fpc0305 18 249 231 True
3 bhP18 0 cb25.fpc4010 8 248 256 True
  bhP14 12.5 cb25.fpc4153 22 241 219 True
  bhP38 16.8-17.5 cb25.fpc2187 44 249 293 True
  bhP12 21.2 cb25.fpc2976 29 248 219 True
  bhP34 21.8 cb25.fpc2976 7 246 239 True
  bhP39 25.7 cb25.fpc0201 13 250 263 Multiple products
  bhP40 30 cb25.fpc0002 20 250 270 True
  bhP10 35.4 cb25.fpc4224 11 249 238 No indel
4 bhP13 1.9-5.1 cb25.fpc3752 14 250 264 True
  bhP15 7.9 cb25.fpc4250 20 250 270 True
  bhP45 17.6 cb25.fpc4260 20 245 265 True
  bhP4 18.2-18.8 cb25.fpc0039 9 250 241 Inconsistent products
  bhP11 20.6 cb25.fpc4090 18 251 233 True
  bhP9 31 cb25.fpc1570 16 256 272 True
  bhP16 43.5 cb25.fpc0107 21 251 230 True
  bhP30 57.8 cb25.fpc3052b 20 248 262 Inconsistent products
  bhP46 57.8 cb25.fpc3052b 10 242 252 Multiple products
5 bhP22 1.9 cb25.fpc4095 14 249 263 Inconsistent products
  bhP31 2.5-3.2 cb25.fpc2114 24 244 268 True
  bhP47 9.6 cb25.fpc2887a 21 243 222 True
  bhP37 18.9 cb25.fpc4470 10 251 261 True
  bhP5 26.7 cb25.fpc0090 16 291 275 True
  bhP23 26.7 cb25.fpc0090 22 250 228 Multiple products
  bhP48 40.2-40.8 cb25.fpc4063 22 249 271 True
  bhP24 56.9 cb25.fpc0129 16 242 258 True
X bhP25 8.4 cb25.fpc0045 32 250 218 True
  bhP36 13.6-16.3 cb25.fpc4044b 11 244 255 True
  bhP26 21-21.7 cb25.fpc0106 22 251 229 True
  bhP49 34.1 cb25.fpc0829 14 250 264 True
  1. The table is organized similar to Table 3. The "Status" column shows whether an indel was correctly verified by PCR (True) or not (False). In all cases DNA sizes were determined by visual inspection.