From: Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes
General BAC clone information | BAC sequence assembly | Sugarcane - sorghum sequence alignment | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
No. | BAC ID | Insert size (kb) | Chra. | GenBank ID | No. of contigs | Assembled BAC (bp) | No. of contig >10 k | No. of un-ambigious contigsb | Total (kb) | No. of ordered contigs | Total length of ordered contigs (kb) | Spanned in sugarcane (bp) | Spanned in sorghum (bp) |
1 | SC0126G04 | 75 | 1 | FJ348725 | 8 | 86,848 | 4 | 7 | 85 | 5 | 79 | 59,458 | 61,142 |
2 | SC0043O10 | 120 | 1 | FJ348717 | 12 | 140,528 | 6 | 7 | 119 | 5 | 118 | 92,727 | 86,118 |
3 | SC0159C20 | 80 | 2 | FJ348726 | 22 | 136,575 | 4 | 19 | 135 | 8 | 100 | 57,277 | 41,718 |
4 | SC0109D21 | 165 | 2 | FJ348722 | 15 | 323,526 | 5 | 9 | 131 | 3 | 93 | 64,904 | 59,816 |
5 | SC0215O02 | 40 | 3 | FJ348732 | 14 | 90,423 | 4 | 10 | 79 | 3 | 38 | 26,478 | 25,458 |
6 | SC0100B23 | 150 | 3 | FJ348719 | 21 | 175,925 | 4 | 14 | 147 | 7 | 118 | 70,340 | 72,844 |
7 | SC0104N03 | 130 | 4 | FJ348720 | 15 | 131,592 | 6 | 13 | 131 | 6 | 95 | 57,524 | 50,074 |
8 | SC0175O07 | 125 | 4 | FJ348729 | 42 | 99,784 | 0 | 37 | 92 | 0 | 0 | \ | \ |
9 | SC0019D20 | 0 | 5 | Â | 0 | 0 | 0 | 0 | 0 | 0 | 0 | \ | \ |
10 | SC0110 M04 | 145 | 5 | FJ348723 | 15 | 147,646 | 6 | 11 | 127 | 4 | 99 | 41,367 | 37,981 |
11 | SC0040E22 | 40 | 6 | FJ348716 | 21 | 59,035 | 1 | 14 | 47 | 3 | 37 | 23,505 | 21,900 |
12 | SC0204D12 | 90 | 6 | FJ348731 | 5 | 96,221 | 3 | 4 | 96 | 2 | 76 | 39,070 | 27,519 |
13 | SC0118L15 | 60 | 7 | FJ348724 | 12 | 101,744 | 1 | 8 | 100 | 4 | 83 | 76,967 | 81,213 |
14 | SC0187J16 | 110 | 7 | FJ348730 | 11 | 119,506 | 6 | 10 | 119 | 4 | 55 | 31,930 | 27,526 |
15 | SC0165P20 | 100 | 8 | FJ348727 | 12 | 94,102 | 1 | 8 | 87 | 1 | 44 | 32,797 | 87,512 |
16 | SC0150 M18 | 65 | 8 | FJ348733 | 6 | 130,463 | 2 | 5 | 129 | 2 | 128 | 113,899 | 315,724 |
17 | SC0108J08 | 60 | 9 | FJ348721 | 12 | 113,932 | 3 | 8 | 104 | 5 | 98 | 79,663 | 69,498 |
18 | SC0079A20 | 160 | 1 | FJ348718 | 14 | 199,955 | 6 | 7 | 89 | 4 | 77 | 61,829 | 65,536 |
19 | SC0172L01 | 80 | 10 | FJ348728 | 19 | 52,373 | 0 | 18 | 50 | 0 | 0 | \ | \ |
20 | SC0043H01 | 60 | 10 | FJ348715 | 11 | 309,732 | 6 | 9 | 122 | 6 | 113 | 56,110 | 58,070 |
Total | Â | 1855 | Â | Â | 287 | 2,609,910 | 74 | 218 | 1989 | 72 | 1451 | 985,845 | 1,189,649 |
1 | SC0118L15* | 60 | 7 | GU207345 | 6 | 62,255 | 3 | 6 | 62 | 6 | 62 | 61,625 | 91,428 |
2 | SC0172L01* | 80 | 10 | GU207346 | 3 | 82,136 | 2 | 3 | 82 | 3 | 82 | \ | \ |