Table 2 Summary of repetitive sequences in sugarcane BACs and the orthologous euchromatic regions in sorghum.
From: Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes
Repeat elements | Sugarcane BAC sequences (1,989,325 bp) | Sorghum homologous region (2,006,815 bp) | ||
|---|---|---|---|---|
| Â | Length (bp) | Percentage of the sequence (%) | Length (bp) | Percentage of the sequence (%) |
Retroelements | 336312 | 16.91 | 334117 | 16.47 |
   SINEs: | 2058 | 0.1 | 2647 | 0.13 |
   LINEs: | 14912 | 0.75 | 7700 | 0.38 |
L1/CIN4 | 14912 | 0.75 | 7700 | 0.38 |
   LTR elements: | 319342 | 16.05 | 323770 | 15.96 |
Ty1/Copia | 70236 | 3.53 | 24017 | 1.18 |
Gypsy/DIRS1 | 23381 | 1.18 | 97819 | 4.82 |
DNA transposons | 116731 | 5.87 | 179859 | 8.86 |
   hobo-Activator | 3563 | 0.18 | 4117 | 0.2 |
   Tc1-IS630-Pogo | 4608 | 0.23 | 5595 | 0.28 |
   En-Spm | 23927 | 1.2 | 39516 | 1.95 |
   MuDR-IS905 | 5529 | 0.28 | 4656 | 0.23 |
Tourist/Harbinger | 44991 | 2.26 | 79754 | 3.93 |
Unclassified: | 36992 | 1.86 | 24513 | 1.21 |
Simple repeats: | 4940 | 0.25 | 9719 | 0.48 |
Low complexity: | 8461 | 0.43 | 10488 | 0.52 |
Total | 507807 | 25.53 | 559303 | 27.57 |