From: Generation of a BAC-based physical map of the melon genome
Tests for initial cutoff valuea | Contigs | Singletons | Physical length (Mb) | Q clonesb | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Test 1e-35 | 1420 | 1133 | 398 | 40/233 | |||||||
Test 1e-45 | 1706 | 1772 | 421 | 40/158 | |||||||
Test 1e-55 | 1909 | 2562 | 432 | 29/84 | |||||||
Test 1e-65 | 2075 | 3399 | 438 | 12/44 | |||||||
Assembly Steps c | Contigs | Singletons | Physical length (Mb) | Q clones b | Longest contig (Mb) | Number of contigs (number of contigs with > 5% Q-clones) d | |||||
≥ 100 | 99-50 | 49-25 | 24-10 | 9-3 | = 2 | ||||||
Initial 1e-45 | 1706 | 1772 | 1.17 | 421 | 40/158 | 0(0) | 6(5) | 63(36) | 393(89) | 968(28) | 276(0) |
DQer (1e-48 to 1e-90) | 1777 | 1923 | 1.10 | 428 | 66/0 | 0 | 1 | 49 | 412 | 1027 | 288 |
Merge 1e-40 | 1750 | 1551 | 1.10 | 432 | 66/0 | 0 | 2 | 51 | 431 | 1017 | 249 |
Merge 1e-35 | 1714 | 1290 | 1.10 | 430 | 66/0 | 0 | 2 | 56 | 442 | 998 | 216 |
Merge 1e-30 | 1650 | 1071 | 1.4 | 426 | 66/0 | 1 | 3 | 62 | 449 | 953 | 182 |
Merge 1e-25 | 1577 | 836 | 1.5 | 421 | 65/0 | 2 | 3 | 69 | 462 | 884 | 157 |
Merge 1e-20 | 1491 | 635 | 2.8 | 415 | 64/0 | 3 | 5 | 79 | 456 | 816 | 132 |
Merge 1e-15 | 1355 | 441 | 3.2 | 407 | 62/0 | 3 | 9 | 102 | 428 | 706 | 107 |