Table 1 Summary statistics of the major rainbow trout Sanger-based EST projects
From: Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
Library Name | Supplier | Tissue/Organ | # in TCs | # of singletons | Total ESTs |
|---|---|---|---|---|---|
NCCCWA 1RT | NCCCWA-USDA | Pooled | 34927 | 11452 | 46379 |
NCCCWA 02RT | NCCCWA-USDA | Pooled | 14506 | 3452 | 17958 |
NCCCWA 03RT | NCCCWA-USDA | Pooled juvenile | 17412 | 651 | 18063 |
NCCCWA 04RT | NCCCWA-USDA | Pooled juvenile | 2198 | 407 | 2605 |
NCCCWA 05RT | NCCCWA-USDA | Pooled juvenile | 1789 | 282 | 2071 |
NCCCWA 07RT | NCCCWA-USDA | Pituitary | 3208 | 321 | 3529 |
NCCCWA 09RT | NCCCWA-USDA | Testis | 4615 | 537 | 5152 |
NCCCWA 10RT#1-4 | NCCCWA-USDA | Oocyte | 254 | 78 | 332 |
NCCCWA 10RT#2 | NCCCWA-USDA | Oocyte | 147 | 19 | 166 |
NCCCWA 10RT#3 | NCCCWA-USDA | Oocyte | 14594 | 3060 | 17654 |
NCCCWA 10RT#4 | NCCCWA-USDA | Oocyte | 68 | 16 | 84 |
leuk | NCCCWA-USDA | Anterior kidney/spleen | 6223 | 166 | 6389 |
EMB | NCCCWA-USDA | Embryo | 3529 | 227 | 3756 |
AGENAE Rainbow trout multi-tissues library (tcaa) | INRA - SCRIBE | Adipose, blood, brain, gonad | 863 | 256 | 1119 |
AGENAE Rainbow trout normalized testis library (tcab) | INRA - SCRIBE | Testis | 730 | 294 | 1024 |
AGENAE Rainbow trout multi-tissues subtracted library (tcay) | INRA - SCRIBE | Adipose, blood, brain, gonad | 17859 | 8433 | 26292 |
AGENAE Rainbow trout normalized ovarian library (tcby) | INRA - SCRIBE | Ovary | 4714 | 204 | 4918 |
AGENAE Rainbow trout normalized multi-tissues library (tcac) | INRA - SCRIBE | Adipose, blood, brain, gonad | 3265 | 713 | 3978 |
AGENAE Rainbow trout subtracted multi-tissues library (tcav) | INRA - SCRIBE | Adipose, blood, brain, gonad | 2516 | 850 | 3366 |
Agenae (tcbj) | INRA - SCRIBE | Â | 179 | 17 | 196 |
AGENAE Rainbow trout normalized multi-tissues library (tcad) | INRA - SCRIBE | Adipose, blood, brain, gonad | 5015 | 1131 | 6146 |
AGENAE Rainbow trout normalized testis library (tcbi) | INRA - SCRIBE | Testis | 11494 | 3603 | 15097 |
AGENAE Rainbow trout multi-tissues-normalized (tcbk) | INRA - SCRIBE | Multi-tissues | 21132 | 5757 | 26889 |
AGENAE Rainbow trout multi-tissues library (tcce) | INRA - SCRIBE | Embryos to adults | 6211 | 1664 | 7875 |
Oncorhynchus mykiss reproductive | University of Victoria | Gonads | 5387 | 848 | 6235 |
Oncorhynchus mykiss Chilliwack River steelhead whole | University of Victoria | Whole embryo/juvenil | 3760 | 246 | 4006 |
Oncorhynchus mykiss Tzenaicut Lake whole | University of Victoria | Whole embryo/juvenil | 2266 | 188 | 2454 |