Table 3 RGP sites (genes flanking RGPs on the right or left) conserved in the P. luminescens TT01 (Pl), P. asymbiotica ATCC43949 (Pa), X. nematophila ATCC19061 (Xn) and X. bovienii strain SS-2004 (Xb) genomes.
| Â | location sites * | Xn | Xb | Pl | Pa |
|---|---|---|---|---|---|
| Â | yjeS_tRNA-gly | GI10 | GI7 | GI103 | core genome |
| Â | ampH_tRNA-leu | GI89 | GI10 | GI100 | P95 |
| Â | yjdC_tRNA-phe | P75 | GI23 | GI94 | GI23 |
| Â | folD_tRNA-arg | P75 | P22bis | GI95 | GI25 |
| Â | rpoD_tRNA-met | P88 | GI29 | GI88 | P86 |
| Â | ylaC_tRNA-ans | GI36 | GI29 | inside GI44 | inside GI64 |
| Â | ghrA_tRNA-ser | GI45 | GI33 | GI49 | GI60 |
tRNA gene integration site | pgsA_tRNAleu_tRNAcys | GI56 | P46 | GI47 | GI61 |
| Â | yjeM_tRNA-pro | GI69 | GI52 | GI71 | P39 |
| Â | mltC_tRNAphe | GI69 | GI64 | GI27 | GI81 |
| Â | gltX_tRNA-val_2tRNAlys_3tRNA-val | GI71bis | GI59 | GI33 | GI35 |
| Â | vacJ_tRNA-arg | GI71bis | inside GI55 | GI76 | inside GI35 |
| Â | rsmC_tRNA-leu | GI76 | GI67 | GI95 | GI13 |
| Â | yccK_tRNA-ser | P43 | GI16 | GI44 | GI64 |
| Â | aroH | not present | RGP43 | RGP64 | RGP48 |
| Â | asmA/hisL | RGP32 | core genome | RGP38 | RGP68 |
| Â | cheZ | RGP35 | RGP30 | RGP45 | RGP63 |
| Â | cpxA/cysE | GI2 | RGP83 | GI110 | GI104 |
| Â | cpxP | RGP1 | RGP82 | GI109 | P103 |
| Â | cspE | RGP28bis | GI61 | RGP31 | RGP62 |
| Â | deaD | core genome | RGP8 | RGP101 | RGP96 |
| Â | dnaB/zur | RGP84 | P77 | RGP96 | RGP94 |
| Â | dnaJ | RGP17 | RGP27 | RGP17 | inside RGP15 |
| Â | dnaQ | GI78 | core genome | GI26 | GI22 |
| Â | dxs | GI22 | GI25 | core genome | RGP82 |
| Â | ecfL | P88 | GI76 | GI88 | P86 |
| Â | eno | GI20 | RGP71 | RGP25 | inside GI21 |
Protein encoding gene integration site | exbD | RGP79 | RGP26 | RGP87 | RGP84 |
| Â | fbaA | RGP65 | RGP58 | GI27 | GI23 |
| Â | fis | GI20 | RGP73 | RGP92 | RGP89 |
| Â | flgL | GP37 | G I31 | RGP46 | GP62 |
| Â | flgN | G I38 | GP30 | GP45 | GP63 |
| Â | flhD | G I36 | G I29 | G I44 | GI64 |
| Â | fliR | GI37 | RGP48 | RGP46 | RGP62 |
| Â | TfrdA/yhhQ | RGP15 | core genome | RGP93 | RGP90 |
| Â | gcvP | RGP25 | core genome | GI81 | GI27 |
| Â | glnG | RGP95 | core genome | RGP5 | RGP5 |
| Â | glnS | RGP29 | inside RGP22 | GI32 | RGP73 |
| Â | glpD | RGP96bis | RGP2 | GI3bis | GI3 |
| Â | gntX (yhgH) | RGP97 | RGP3 | RGP4 | RGP4 |
| Â | gyrB/glmS | RGP0 | RGP0 | P0 | P0 |
| Â | hrpA | RGP49bis | RGP38 | RGP52 | GI57 |
| Â | kdpE | RGP29 | RGP22 | GI33 | RGP73 |
| Â | leuB | RGP22bis | GI65 | RGP85bis | core genome |
| Â | lysS | P26 | GI64 | P80 | GI28 |
| Â | malM | GI91 | core genome | GI12 | GI10 |
| Â | mdtA | core genome | RGP48 | GI68 | RGP43 |
| Â | mdtC/icd | RGP60 | GI49 | GI69 | GI42 |
| Â | mltD | RGP77 | GI57 | RGP25 | GI21 |
| Â | mobB | GI91 | RGP81 | core genome | RGP8 |
| Â | nagC/ubiG | core genome | GI60 | core genome | GI75 |
| Â | nhaA | GI79 | RGP27 | RGP17 | RGP15 |
| Â | nth/yciH | GI50 | core genome | GI56 | RGP54 |
| Â | pbgE | RGP40 | RGP43 | RGP64 | RGP48 |
| Â | pckA | RGP100 | RGP1 | RGP3 | RGP3bis |
| Â | pgpA | RGP19 | GI25 | core genome | RGP82 |
| Â | phoU | RGP95 | RGP4 | RGP5 | RGP5 |
| Â | pntB | RGP49 | GI37 | RGP53 | inside GI57 |
| Â | ppx | core genome | P32 | GI68 | RGP43 |
| Â | prlC | RGP96 | RGP2 | GI3bis | GI3 |
| Â | prmB | RGP71 | RGP55 | RGP75 | GI35 |
| Â | pta | GI63 | RGP53 | GI73 | RGP37 |
| Â | purC | core genome | P46 | RGP67 | RGP45 |
| Â | purK | core genome | GI59 | RGP86 | RGP24 |
| Â | putP | GI36 | P32 | GI47 | GI61 |
| Â | rpmG | RGP4 | core genome | RGP111 | RGP105 |
| Â | rpoC | RGP94 | core genome | GI12 | GI10 |
| Â | rpoH | RGP16 | RGP14 | RGP92 | RGP89 |
| Â | rpoS | RGP81 | core genome | RGP22 | RGP19 |
| Â | rrmA/guaA | RGP42 | RGP44 | RGP66 | core genome |
| Â | sbcC | RGP17 | RGP26 | RGP87 | RGP84 |
| Â | smpB | RGP72 | core genome | P80 | GI28 |
| Â | sprT | GI22 | RGP71 | GI85 | GI25 |
| Â | thiH | RGP12 | RGP79 | RGP13 bis | RGP11 |
| Â | thrS | GI39 | core genome | RGP65 | RGP47 |
| Â | tldD | RGP19 | core genome | RGP90 | RGP88 |
| Â | tpiA | GI5 | RGP82 | GI109 | P103 |
| Â | trmE | RGP100 | P85 | RGP112 | RGP106 |
| Â | typA | RGP99 | RGP5 | core genome | RGP6 |
| Â | tyrB | core genome | GI76 | GI95 | RGP93 |
| Â | ung/srmB | RGP73 | core genome | GI79 | GI29 |
| Â | uvrY | GI57 | RGP47 | RGP48 | inside GI61 |
| Â | valS | RGP90 | RGP9 | RGP101 | RGP96bis |
| Â | xseA | P43 | RGP45 | RGP67 | RGP45 |
| Â | yafK | RGP66 | GI63 | RGP28 | RGP79 |
| Â | ybhL/folE | GI31 | RGP20 | GI37 | RGP69 |
| Â | yccR | RGP35 | GI16bis | core genome | GI64 |
| Â | ychM | inside GI45 | GI33 | GI49 | GI60 |
| Â | yfaE | RGP65 | P15 | RGP72 | RGP38 |
| Â | yfiF | RGP28bis | GI61 | RGP31 | core genome |
| Â | ygdE | RGP86 | GI10 | core genome | RGP16 |
| Â | yheS | RGP93 | core genome | RGP11 | GI9 |
| Â | yhgF | RGP96 | RGP3 | RGP4 | inside RGP4 |
| Â | yicC | GI5 | P85 | RGP112 | RGP106 |
| Â | yjeP | core genome | RGP81 | RGP104 | RGP98 |
| Â | ynfK | core genome | GI37 | RGP54 | GI57 |