From: Comparing de novo assemblers for 454 transcriptome data
Assembler | Type†| Splits reads* | Author | Cost | Source available | URL |
---|---|---|---|---|---|---|
CAP3 | OLC†| No | X Huang and A Madan [38] | Free for use at non-profit organizations | No | |
CLC Assembly Cell 3.0 | de Bruijn graph | Yes | CLC | Request quote or trial license | No | |
MIRA 3.0 | OLC | No | Bastien Chevreux [40] | Free | Yes, GPL | |
Newbler 2.3 and Newbler 2.5 | OLC | Yes | Roche 454 [37] | Free for academic use | No | http://454.com/products-solutions/analysis-tools/gs-de-novo-assembler.asp |
SeqMan NGen 2.1 | OLC | No | DNAStar [41] | Request quote or trial license | No |