Comparing de novo assemblers for 454 transcriptome data

BMC Genomics

Table 8 BLASTX hits to 3,731 KOGs containing 9,782 C. elegans proteins

	CAP3	CLC	MIRA	Newbler 2.3	Newbler 2.5	SeqMan
% of unique KOGs hit	89.2	89.7	88.6	83.7*	89.7	90.1
% of unique KOGs hit where individual HSPs covered 80% of target protein	30.2	27.1	28.6	33.0	35.7	30.4

Note: E-value cutoff 1e-5
* indicates a value significantly lower than the others (p < 0.01), using a Huber M-estimator.

ISSN: 1471-2164