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Table 3 Probe-sets with expression levels that are correlated with principal component 2 and information about their eQTL.

From: Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits

Annotation

eQTL

individual trait correlation*

Prob_set_IDs

Gene Symbols

SSC

cM

F

traits

Ssc.25132.3.S1

RAD23B

1

130

5.11

DL, -pH1ld, LF1ld, LF24sm

Ssc.11839.1.S1

ZNF462

1

138

8.12

SF

Ssc.21636.1.A1

FILIP1

1

142

5.4

pH24ld

Ssc.21225.1.S1

RNASEH2C

2

1

5.2

LF24sm

Ssc.27245.1.S1

RTN3

2

18

10.8

-LF24sm

Ssc.5869.1.S1

SART1

2

42

8.7

LF24sm

Ssc.11130.2.A1

 

2

50

5.4

LF24sm

Ssc.16460.1.S1

EGR1

2

52

6.2

-LF24sm

Ssc.28435.1.A1

EHD1

2

56

8.21

CL, -pH24ld, -pH24sm, LF24sm

Ssc.6529.1.A1

AFF4

2

132

9.3

pH24ld, pH24sm, -LF24ld

Ssc.16877.1.S1

LOC728816

3

0

6.4

OPTO

Ssc.15224.3.A1

FOSL2

3

0

5.8

pH24ld, pH24sm

Ssc.1051.1.S1

TGOLN2

3

86

5.9

pH24ld

Ssc.15224.2.S1

FOSL2

3

86

6.2

-DL, pH24ld, pH24sm

Ssc.15224.1.S1

FOSL2

3

86

6.3

-DL, -SF, -TL, pH24ld, pH24sm

Ssc.24035.1.S1

EIF2C2

4

45

7.4

-DL, -TL

Ssc.5112.2.S1

LMNA

4

67

9.54

pH24ld, pH24sm

Ssc.3935.1.S1

SLC48A1

5

89

5.2

LF24sm

Ssc.26780.1.S1

BCL2L12

6

0

6.9

DL, -pH24ld, -pH24sm, LF24sm,

Ssc.1545.1.A1

TCF25

6

0

5.7

LF24sm

Ssc.20488.1.A1

RPS9

6

65

8.4

DL, TL

Ssc.14436.1.S1

USP14

6

92

5.4

pH24ld

Ssc.10297.3.S1

CAPZB

6

95

6.2

DL, CL, TL, -pH24ld, LF24ld, LF24sm

Ssc.10297.1.S1

CAPZB

6

99

6

CL, LF24sm

Ssc.21139.2.S1

CLIC5

7

14

6

pH1ld

Ssc.10148.1.S1

MTHFD1

7

81

16.1

-OPTO, LF1ld

Ssc.22107.1.A1

LOC100131693

8

110

5.8

pH24ld, LF24sm

Ssc.16983.1.S1

TRAPPC4

9

62

7.7

-OPTO

Ssc.22376.1.A1

 

12

63

5.5

OPTO

Ssc.4217.1.S1

ITIH4

13

47

7.3

-DL, pH1ld, -LF24sm

Ssc.20319.1.S1

TMEM115

13

47

5.2

LF24sm,

Ssc.31206.3.S1

CGGBP1

13

52

5.9

-pH24ld,

Ssc.10429.1.S1

ANKRD1

14

0

6

-DL, pH24ld, -LF24sm

Ssc.10911.1.A1

ADRBK2

14

0

6

-CL, pH24ld, -LF24ld

Ssc.18050.1.S1

ZRANB1

14

87

5.6

-LF24sm

Ssc.11397.1.A1

MTG1

14

96

6.7

LF24sm

Ssc.6058.1.S1

LOC100129026

16

55

4.9

-DL, -SF, -LF24sm

Ssc.18640.3.S1

UBE2D1

18

34

4.9

DL, LF24sm

  1. "*"the probe-sets listed here represent a subset of probe-sets correlated with individual meat quality traits as indicated in this column naming the traits with which the corresponding probe-sets show correlated expression in addition to the correlated expression with PC2; "-" indicates negative correlation
  2. Trait abbreviations are given at table 2.