Skip to main content

Table 4 Probe-sets with expression levels that are correlated with principal component 3 and information about their eQTL

From: Identification of expression QTL (eQTL) of genes expressed in porcine M. longissimus dorsi and associated with meat quality traits

Annotation

eQTL

individual trait correlation*

Prob_set_IDs

Gene Symbols

SSC

cM

F

traits

Ssc.16910.1.S1

ROD1

1

13

5.92

CL, LF24ld

Ssc.26338.1.S1

PRKAG1

1

30

6.69

-LF24ld

Ssc.29222.1.S1

UBE2CBP

1

31

5.72

pH1ld, -LF1ld, -LF24ld

Ssc.3853.1.S1

C9orf61

1

54

7.98

-DL, pH1ld, -LF24sm

Ssc.20392.1.S1

BVES

1

63

22.1

-pH1ld

Ssc.7558.1.A1

 

1

127

7.96

-SF, pH1ld, -LF24ld

Ssc.25132.3.S1

RAD23B

1

130

5.11

DL, -pH1ld, LF1ld, LF24sm

Ssc.16460.1.S1

EGR1

2

52

6.24

-LF24sm

Ssc.29893.1.A1

RHOBTB3

2

94

7.37

LF24ld

Ssc.14340.3.S1

LITAF

3

37

6.69

-pH1ld

Ssc.7947.1.A1

PREPL

3

61

5.13

-pH1ld

Ssc.2441.2.A1

SLC3A1

3

64

6.08

-pH1ld, LF24ld

Ssc.24213.2.S1

UXS1

3

74

5.71

LF24ld, LF24sm

Ssc.5415.1.S1

DDX1

3

86

4.96

pH1ld, -pH24ld, -LF24ld

Ssc.8547.1.A1

 

3

86

7.11

pH1ld, LF24sm

Ssc.19258.1.S1

KCNJ8

5

0

5.98

-LF1ld

Ssc.5769.1.S1

Rassf3

5

3

7.01

pH1ld, -LF24ld

Ssc.3935.1.S1

SLC48A1

5

89

5.17

LF24sm

Ssc.10297.3.S1

CAPZB

6

95

6.17

DL, CL, TL, -pH24ld, LF24ld, LF24sm

Ssc.10297.1.S1

CAPZB

6

99

6

CL, LF24sm

Ssc.2152.2.S1

BSDC1

6

112

4.92

TL

Ssc.25358.1.S1

GRAMD2

7

5

5.41

-CL, pH1ld, -LF24ld

Ssc.21139.2.S1

CLIC5

7

14

6

pH1ld

Ssc.17920.2.S1

C15orf17

7

44

7.21

LF24sm

Ssc.30959.1.A1

LOC100153449

7

55

6.11

pH1ld

Ssc.17920.1.A1

C15orf17

7

91

7.56

-LF24sm

Ssc.8611.2.S1

MLL5

9

0

6.06

LF24ld, LF24sm

Ssc.28945.3.S1

FAM133B

9

0

5.15

LF24sm

Ssc.23527.1.A1

C11orf57

9

0

7.79

LF24sm

Ssc.8415.1.A1

BACE1

9

2

5.28

LF24sm

Ssc.16454.1.S1

DNAJC2

9

7

5.51

LF24sm

Ssc.6155.1.S1

CTSC

9

13

8.95

pH24ld, pH24sm

Ssc.28609.1.S1

SNHG1

9

45

5.21

-LF24sm

Ssc.25107.1.S1

BAT2D1

9

51

6.56

LF24ld, LF24sm

Ssc.1537.1.S2

YKT6

9

82

5.23

LF24sm

Ssc.8563.2.S1

RBM27

11

67

5.11

LF24ld

Ssc.30812.1.S1

SPAG7

12

0

5.02

pH1ld, LF24sm

Ssc.6130.1.S1

FBXW11

13

46

8.08

pH24sm

Ssc.4217.1.S1

ITIH4

13

47

7.31

-DL, pH1ld, -LF24sm

Ssc.6767.1.S1

dJ196E23.2

13

53

5.05

LF24sm

Ssc.7384.1.A1

ZFYVE20

13

53

7.69

LF24sm

Ssc.30107.1.S1

C10orf59

14

50

6.38

-LF1ld

Ssc.11118.1.S1

ATP5B

14

86

5.44

-LF24ld

Ssc.24012.1.S1

TSN

15

10

5.26

-LF24ld

Ssc.9483.1.A1

Osbpl6

15

28

7.28

-LF24sm

Ssc.13904.1.S1

TM2D2

15

51

6.73

-pH1ld, LF24sm

Ssc.13358.1.A1

Agbl3

18

4

5.67

DL,LF24sm

  1. "*"the probe-sets listed here represent a subset of probe-sets correlated with individual meat quality traits as indicated in this column naming the traits with which the corresponding probe-sets show correlated expression in addition to the correlated expression with PC3; "-" indicates negative correlation
  2. Trait abbreviations are given at table 2.