Table 3 Selected genes down-regulated in tendril tip cells
From: Gene expression in Pseudomonas aeruginosa swarming motility
Gene number | Gene name | Product name | Tip vs. non-swarming fold change (log2) |
|---|---|---|---|
Adaptation, Protection | Â | ||
PA21471 | katE | catalase HPII | -3.2 |
Chemotaxis | Â | ||
PA19301 | mcpS | probable chemotaxis transducer | -2.8 |
PA27882 | Â | probable chemotaxis transducer | -2.3 |
PA4915 | Â | probable chemotaxis transducer | -1.6 |
Biosynthesis of cofactors, prosthetic groups and carriers | Â | ||
PA1985 | pqqA | pyrroloquinoline quinone biosynthesis protein A | -2.2 |
PA1986 | pqqB | pyrroloquinoline quinone biosynthesis protein B | -1.9 |
PA1987 | pqqC | pyrroloquinoline quinone biosynthesis protein C | -1.8 |
PA19882 | pqqD | pyrroloquinoline quinone biosynthesis protein D | -2.2 |
PA1989 | pqqE | pyrroloquinoline quinone biosynthesis protein E | -1.6 |
Energy metabolism | Â | ||
PA01052 | coxB | cytochrome c oxidase, subunit II | -2.9 |
PA01062 | coxA | cytochrome c oxidase, subunit I | -2.7 |
PA01072 | Â | conserved hypothetical protein | -2.2 |
PA01082 | coIII | cytochrome c oxidase, subunit III | -1.9 |
PA11752 | napD | NapD protein of periplasmic nitrate reductase | -2.2 |
PA11772 | napE | periplasmic nitrate reductase protein NapE | -2.3 |
PA1931 | Â | probable ferredoxin | -2.2 |
PA21532 | glgB | 1,4-alpha-glucan branching enzyme | -3.6 |
PA21652 | Â | probable glycogen synthase | -2.9 |
PA22902 | gcd | glucose dehydrogenase | -1.6 |
PA3416 | Â | probable pyruvate dehydrogenase E1 component, beta chain | -1.9 |
PA3417 | Â | probable pyruvate dehydrogenase E1 component, alpha subunit | -1.6 |
PA5427 | adhA | alcohol dehydrogenase | -2.2 |
Secreted Factors (toxins, enzymes, alginate) | Â | ||
PA25702 | lecA | LecA | -4.5 |
PA1148 | toxA | exotoxin A precursor | -1.5 |
PA12452 | aprX | Hypothetical protein | -2.5 |
PA12462 | aprD | alkaline protease secretion protein AprD | -3.0 |
PA1247 | aprE | alkaline protease secretion protein AprE | -1.6 |
PA1249 | aprA* | alkaline metalloproteinase precursor | -1.4 |
PA12502 | aprI | alkaline proteinase inhibitor AprI | -1.9 |
PA18712 | lasA | LasA protease precursor | -3.2 |
PA29393 | pepB | Aminopeptidase | -1.5 |
PA1130 | rhlC | rhamnosyltransferase 2 | -1.5 |
PA1131 | Â | probable major facilitator superfamily (MFS) transporter | -1.6 |
PA3478 | rhlB | rhamnosyltransferase 1 | -2.3 |
PA34792 | rhlA | HAA synthase | -2.0 |
PA22553 | pvcB | paerucumarin biosynthesis protein PvcB | -1.7 |
PA2402 | pvdI | non-ribosomal peptide synthase PvdI | -1.5 |
PA24063 | Â | hypothetical protein | -1.9 |
PA24083 | Â | probable ATP-binding component of ABC transporter | -1.7 |
PA24112 | Â | probable thioesterase | -1.7 |
PA24122 | Â | hypothetical protein | -1.6 |
PA24132 | pvdH | L-2,4-diaminobutyrate:2-ketoglutarate 4-aminotransferase, PvdH | -2.0 |
PA24242 | pvdL | Predicted non-ribosomal peptide synthetase PvdL | -2.3 |
PA2425 | pvdG | Thioesterase PvdG | -1.8 |
PA4222 | pchI | probable ATP-binding component of ABC transporter | -2.0 |
PA42232 | pchH | probable ATP-binding component of ABC transporter | -2.0 |
PA42242 | pchG | pyochelin biosynthesis protein PchG | -2.3 |
PA42252 | pchF | pyochelin synthetase | -2.4 |
PA42262 | pchE | dihydroaeruginoic acid synthetase | -2.2 |
PA4228 | pchD | pyochelin biosynthesis protein PchD | -1.7 |
PA42292 | pchC | pyochelin biosynthetic protein PchC | -1.8 |
PA4230 | pchB | salicylate biosynthesis protein PchB | -1.8 |
PA4231 | pchA | salicylate biosynthesis isochorismate synthase | -1.8 |
Transcription factors | Â | ||
PA2259 | ptxS | transcriptional regulator PtxS | -2.0 |
PA0471 | fiuR | Anti-sigma factor for FiuI | -1.9 |
PA0472 | fiuI | sigma-70 factor, ECF subfamily | -1.5 |
PA1300 | Â | sigma-70 factor, ECF subfamily | -1.9 |
PA2895 | Â | Anti-sigma factor for PA2896 | -1.9 |
PA2896 | Â | sigma-70 factor, ECF subfamily | -1.8 |
PA1912 | Â | sigma-70 factor, ECF subfamily | -1.8 |
PA2312 | Â | probable transcriptional regulator | -1.7 |
PA5116 | Â | probable transcriptional regulator | -1.6 |
Two-component regulatory systems | Â | ||
PA3346 | Â | probable two-component response regulator | -1.6 |
PA1243 | Â | probable sensor/response regulator hybrid | -2.2 |
PA2177 | Â | probable sensor/response regulator hybrid | -1.8 |