From: Gene duplications in prokaryotes can be associated with environmental adaptation
Clus | N | Main species | Main terms |
---|---|---|---|
1 | 65 | Shigella sp. (10.8%) Yersinia pestis (7.7%) | GO BP 0006259 DNA metabolic process (98.5%) GO BP 0006313 transposition, DNA-mediated (75.8%) |
2 | 44 | Burkholderia sp. (15.9%) | GO BP 0006810 transport (37.8%) |
3 | 39 | Pseudomonas sp. (25.6%) Methanococcus sp. (15.4%) | GO BP 0006082 organic acid metabolic process (37.5%) GO BP 0008652 cellular amino acid biosynthetic process (35.0%) |
4 | 34 | Streptococcus sp. (47.1%) Clostridium sp. (20.6%) | GO BP 0005975 carbohydrate metabolic process (40.0%) GO MF 0050044 galactose-6-phosphate isomerase activity (31.4%) |
5 | 23 | Synechococcus sp. (30.4%) Prochlorococcus marinus (26.1%) | GO BP 0015979 photosynthesis (91.7%) |
6 | 23 | Burkholderia sp. (13.0%) | GO BP 0045449 regulation of transcription (91.7%) |
7 | 19 | Escherichia coli (89.5%) | GO MF 0051539 4 iron, 4 sulfur cluster binding (90.0%) |
8 | 16 | Salmonella enterica (87.5%) | GO BP 0017004 cytochrome complex assembly (94.1%) GO MF 0016829 lyase activity (88.2%) |
9 | 16 | Bacillus sp. (87.5%) | GO MF 0022857 transmembrane transporter activity (64.7%) GO BP 0009254 peptidoglycan turnover (64.7%) |
10 | 16 | Staphylococcus sp. (100%) | GO CC 0005576 extracellular region (82.4%) GO BP 0009405 pathogenesis (76.5%) |
11 | 16 | Campylobacter jejuni (18.8%) | GO CC 0044460 flagellum part (88.2%) |
12 | 15 | Rhodopseudomonas palustris (33.3%) | GO BP 0040011 locomotion (93.8%) GO BP 0006935 chemotaxis (93.8%) |
13 | 12 | Mycobacterium sp. (83.3%) | INTERPRO IPR009416 Protein of unknown function (76.9%) COG ONTOLOGY Cell motility and secretion (46.2%) |