From: Gene duplications in prokaryotes can be associated with environmental adaptation
Cluster 1 - COG classification C (Energy production and conversion) | |||
---|---|---|---|
GO terms | GO:0005507 | copper ion binding | function |
 | GO:0043167 | ion binding | function |
 | GO:0043169 | cation binding | function |
 | GO:0046872 | metal ion binding | function |
 | GO:0046914 | transition metal ion binding | function |
Organisms | Dinoroseobacter_shibae_DFL_12 | bacteria | Alphaprot. |
 | Mycobacterium_gilvum_PYR-GCK | bacteria | Actinobac. |
 | Nitrobacter_hamburgensis_X14 | bacteria | Alphaprot. |
Cluster 2 - COG classification N (Cell motility and secretion) | |||
GO terms | GO:0009288 | bacterial-type flagellum | component |
 | GO:0019861 | flagellum | component |
 | GO:0042995 | cell projection | component |
 | GO:0044460 | flagellum part | component |
 | GO:0044461 | bacterial-type flagellum part | component |
 | GO:0044463 | cell projection part | component |
Organisms | Alkaliphilus_metalliredigens_QYMF | bacteria | Firmicutes |
 | Desulfovibrio_desulfuricans_G20 | bacteria | Deltaprot. |
 | Magnetococcus_MC-1 | bacteria | Other Bacteria |
 | Xanthomonas_oryzae_PXO99A | bacteria | Gammaprot. |
Cluster 3 - COG classification R (General function prediction only) | |||
GO terms | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | function |
 | GO:0016798 | hydrolase activity, acting on glycosyl bonds | function |
Organisms | Anaerocellum_thermophilum_DSM_6725 | bacteria | Firmicutes |
 | Escherichia_coli_O157_H7_EC4115 | bacteria | Gammaprot. |
 | Escherichia_coli_O157H7 | bacteria | Gammaprot. |
 | Sodalis_glossinidius_morsitans | bacteria | Gammaprot. |
 | Streptococcus_pyogenes_MGAS315 | bacteria | Firmicutes |
 | Streptococcus_pyogenes_SSI-1 | bacteria | Firmicutes |
 | Streptomyces_coelicolor | bacteria | Actinobac. |
Cluster 4 - COG classification L (DNA replication, recombination and repair) | |||
GO terms | GO:0008168 | methyltransferase activity | function |
 | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | function |
 | GO:0009008 | DNA-methyltransferase activity | function |
 | GO:0016741 | transferase activity, transferring one-carbon groups | function |
Organisms | Bartonella_tribocorum_CIP_105476 | bacteria | Alphaprot. |
 | Cyanothece_PCC_7424 | bacteria | Cyanobac. |
 | Frankia_EAN1pec | bacteria | Actinobac. |
 | Orientia_tsutsugamushi_Boryong | bacteria | Alphaprot. |
 | Orientia_tsutsugamushi_Ikeda | bacteria | Alphaprot. |
Cluster 5 - COG classification P (Inorganic ion transport and metabolism) | |||
GO terms | GO:0006811 | ion transport | process |
 | GO:0006812 | cation transport | process |
 | GO:0015674 | di-, tri-valent inorganic cation transport | process |
Organisms | Escherichia_coli_K_12_substr__DH10B | bacteria | Gammaprot. |
 | Methanosarcina_barkeri_fusaro | archaea | Euryarchaeota |
 | Ralstonia_metallidurans_CH34 | bacteria | Betaprot. |
Cluster 6 - COG classification D (Cell division and chromosome partitioning) | |||
GO terms | GO:0004359 | glutaminase activity | function |
 | GO:0042242 | cobyrinic acid a, c-diamide synthase activity | function |
Organisms | Borrelia_burgdorferi_ZS7 | bacteria | Spirochaetes |
 | Halobacterium_sp | archaea | Euryarchaeota |
 | Methanosarcina_barkeri_fusaro | archaea | Euryarchaeota |
 | Xanthobacter_autotrophicus_Py2 | bacteria | Alphaprot. |