Table 1 Enterobacterial Genome Sequences
Genus | Species | Isolate | Patho-/Serotype | Genbank-ID | Reference |
|---|---|---|---|---|---|
Part A - Reference genomes | |||||
Escherichia | coli | K-12 MG1655 | non-pathogenic | U00096.2 | [70] |
| Â | Â | K-12 W3110 | non-pathogenic | AP009048.1 | [71] |
| Â | Â | Nissle 1917 | commensal | -- | -- |
| Â | Â | O9 HS | commensal | CP000802.1 | [35] |
| Â | Â | 536 | UPEC | CP000247.1 | [72] |
| Â | Â | UTI89 | UPEC | CP000243.1 | [73] |
| Â | Â | CFTO73 | UPEC | AE014075.1 | [74] |
| Â | Â | O157:H7 EDL933 | EHEC | AE005174.2 | [75] |
| Â | Â | O157:H7 Sakai | EHEC | BA000007.2 | [76] |
| Â | Â | O42 | EAEC | N554766 | [77] |
| Â | Â | E2348-69 | EPEC | FM180568 | [78] |
| Â | Â | APEC O1 | APEC | CP000468.1 | [79] |
| Â | Â | 789 | APEC | -- | -- |
Shigella | flexneri | 2a 301 | 2a | AE005674.1 | [80] |
| Â | Â | 5b 8401 | 5b | CP000266.1 | [81] |
| Â | Â | 2a 2457T | 2a | AE014073.1 | [82] |
| Â | dysenteriae | Sd197 | 1 | CP000034.1 | [83] |
| Â | sonnei | Ss046 | 1 | CP000038.1 | [83] |
| Â | boydii | Sb227 | 4 | CP000036.1 | [83] |
Klebsiella | pneumoniae | MGH78578 | Â | CP000647.1 | [84] |
Salmonella | enterica | Paratyphi ATCC9150 | A | CP000026.1 | [85] |
| Â | Â | Choleraesuis SC-B57 | C1 | AE017220.1 | [86] |
| Â | Â | Typhi Ty2 | D1 | AE014613.1 | [87] |
| Â | Â | Typhi CT18 | D1 | AL513382.1 | [88] |
| Â | typhimurium | LT2 | B | AE006468.1 | [89] |
| Â | bongori | 12419 | -- | -- | Sanger Institute |
Yersinia | pestis | CO92 | Orientalis | AL590842.1 | [90] |
| Â | Â | KIM | Medievalis | AE009952.1 | [91] |
| Â | Â | 91001 | Microtus | AE017042.1 | [92] |
| Â | Â | Antiqua | Antiqua | CP000308.1 | [93] |
| Â | Â | Nepal516 | -- | CP000305.1 | [93] |
| Â | pseudotuberculosis | IP32953 | -- | CP000720.1 | [33] |
| Â | enterocolitica | 8081 | -- | AM286415.1 | [94] |
Part B - Recently published genomes | |||||
Escherichia | coli | DH10B | non-pathogenic | CP000948.1 | [95] |
| Â | Â | ED1a | non-pathogenic | CU928162.2 | Genoscope C.E.A. |
| Â | Â | SE11 | non-pathogenic | AP009240.1 | [96] |
| Â | Â | ATCC8739 | non-pathogenic | CP000946.1 | Joint Genome Institute |
| Â | Â | IAI1 | non-pathogenic | CU928160.2 | Genoscope C.E.A. |
| Â | Â | IAI39 | UPEC | CU928164.2 | Genoscope C.E.A. |
| Â | Â | UMN026 | UPEC | CU928163.2 | Genoscope C.E.A. |
| Â | Â | SMS-3-5 | non-pathogenic | CP000970.1 | [35] |
| Â | Â | O157:H7 EC4115 | EHEC | CP001164.1 | J. Craig Venter Institute |
| Â | Â | O157:H7 EC4115 | EHEC | CP001164.1 | J. Craig Venter Institute |
| Â | Â | 55989 | EAEC | CU928145.2 | Genoscope C.E.A. |
| Â | Â | E24377A | ETEC | CP000800.1 | The Institute for Genomic Research |
| Â | Â | S88 | MNEC | CU928161.2 | Genoscope C.E.A. |
Shigella | boydii | CDC 3083-94 | 18 | CP001063.1 | J. Craig Venter Institute |
Salmonella | enterica | Enteritidis P125109 | PT4 | AM933172.1 | [97] |
Klebsiella | pneumoniae | 342 | Â | CP000964.1 | [31] |